Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1990 219 8e-55 seq1989 159 7e-37 >seq1990 Length=122890 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 86730 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 86671 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 86670 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 86611 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| || ||| ||||||||||| |||||| | ||| ||||| || || Sbjct 86610 CGTCGCCTTGGTAAGCCATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTTAG 86551 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || | | ||||| | ||||| ||||||||| Sbjct 86550 GCGGATTCCTCCTT--TTA------------CTCCTC--AGCTTATGGGGTATTAGCAAC 86507 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| | || ||| || |||||||| || ||| |||||||||||||||| Sbjct 86506 CGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 86448 Query 300 CCACT 304 ||||| Sbjct 86447 CCACT 86443 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 121372 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 121431 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 121432 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 121491 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| || ||| ||||||||||| |||||| | ||| ||||| || || Sbjct 121492 CGTCGCCTTGGTAAGCCATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTTAG 121551 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || | | ||||| | ||||| ||||||||| Sbjct 121552 GCGGATTCCTCCTT--TTA------------CTCCTC--AGCTTATGGGGTATTAGCAAC 121595 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| | || ||| || |||||||| || ||| |||||||||||||||| Sbjct 121596 CGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 121654 Query 300 CCACT 304 ||||| Sbjct 121655 CCACT 121659 >seq1989 Length=105340 Score = 159 bits (176), Expect = 7e-37 Identities = 124/148 (84%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71 |||||| |||| |||||||| ||| || |||||||||||||||||||||||||||||||| Sbjct 31382 ATCAGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 31323 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 |||||||||||||| |||||| | ||| || || || |||| ||||| ||||||| Sbjct 31322 GTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCGTAGGCTTGG 31263 Query 132 TGGGCTATTATCTCACCAACTACCTAAT 159 | ||| ||| || |||||||||||||| Sbjct 31262 TCAGCTTTTACCTAACCAACTACCTAAT 31235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998380131840