Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1990 208 2e-51 seq1989 159 8e-37 >seq1990 Length=122890 Score = 208 bits (230), Expect = 2e-51 Identities = 299/408 (73%), Gaps = 20/408 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 91355 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 91296 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 91295 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 91236 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | | | ||||| || || | | Sbjct 91235 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCTGATGCTTC-CCTCTAAGGC 91180 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| || |||| | Sbjct 91179 GGAACGCTCCCCTACCGATGTATTTTGACA---TCCCACAGCTTCGGCAGACCGCTTA-G 91124 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 |||| | ||| ||||||| | | ||||| ||||||||||||||||||||||||||| Sbjct 91123 TCCCGTT-CATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTCAAG 91065 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACT 350 | |||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||| Sbjct 91064 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCA-CTCCTACCTCCTTTACCACT 91006 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||||||||||||| ||||||||||||||||||||| Sbjct 91005 TAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 90958 Score = 208 bits (230), Expect = 2e-51 Identities = 299/408 (73%), Gaps = 20/408 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 116747 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 116806 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 116807 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 116866 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | | | ||||| || || | | Sbjct 116867 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCTGATGCTTC-CCTCTAAGGC 116922 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| || |||| | Sbjct 116923 GGAACGCTCCCCTACCGATGTATTTTGACA---TCCCACAGCTTCGGCAGACCGCTTA-G 116978 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 |||| | ||| ||||||| | | ||||| ||||||||||||||||||||||||||| Sbjct 116979 TCCCGTT-CATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTCAAG 117037 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACT 350 | |||||||||| | || |||||||||| ||||| || ||||| || |||||| ||||| Sbjct 117038 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGC-ACTCCTACCTCCTTTACCACT 117096 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||||||||||||| ||||||||||||||||||||| Sbjct 117097 TAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 117144 >seq1989 Length=105340 Score = 159 bits (176), Expect = 8e-37 Identities = 150/189 (79%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA--CTTGACCAGTG 269 ||||||| | || |||| ||||||| |||||| |||| || || | || |||||||| Sbjct 35878 GCTTCGGTGAATCACTTCAGCCCCGATACATTTTCGGTGCC--ATGAAGCTAGACCAGTG 35821 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 35820 AGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGC 35761 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 || |||||| ||||| ||| | |||| || ||||||| | ||||||||||| Sbjct 35760 TCGATTACTTCCTTTTCCACTAAGTGATTGCTTAAGGACCTTAGCGTACGATCTGGGCTG 35701 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 35700 TTTCCCTCT 35692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177576565760