Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1989 120 3e-25 seq1990 109 5e-22 >seq1989 Length=105340 Score = 120 bits (132), Expect = 3e-25 Identities = 126/162 (78%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| | | || ||||| || ||| ||||| ||| Sbjct 32342 TCGAGTTGCAGAGAACAATCCGAACTGAGGCTAT-CTTTCCGG-ATTCGCTCCGCCTTAA 32285 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | | || || |||| | |||||||| ||||||| ||||| |||||||||||| Sbjct 32284 AGCCTTGCTTCCTATTGTAATTGCCATTGTAGCACGTGTGTAGCCCAGCCCATAAGGGCC 32225 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||||||||||||||||||||||| || | |||| Sbjct 32224 ATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 32183 >seq1990 Length=122890 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| || | |||||| ||||||||| Sbjct 87629 CGAGTTGCAGCCTGCAATCCGAACTGAGGCCGGGTTTTTGAGGTTAGCTTGCCCTCGCGG 87570 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| | |||||| ||| Sbjct 87569 GGTCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCGTAAGGGGCAT 87510 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 87509 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 87470 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| || | |||||| ||||||||| Sbjct 120473 CGAGTTGCAGCCTGCAATCCGAACTGAGGCCGGGTTTTTGAGGTTAGCTTGCCCTCGCGG 120532 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| | |||||| ||| Sbjct 120533 GGTCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCGTAAGGGGCAT 120592 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 120593 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 120632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415991980300