Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1990 271 1e-70 seq1989 208 1e-51 seq1931 102 1e-19 >seq1990 Length=122890 Score = 271 bits (300), Expect = 1e-70 Identities = 226/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| |||| ||| ||||| Sbjct 92753 GAGGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAG 92694 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | ||| | | |||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 92693 CGTATACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA 92634 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| || |||||| | |||||| ||||||||||||||| Sbjct 92633 CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCA 92574 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || Sbjct 92573 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAC 92514 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| | || |||||||||||| Sbjct 92513 GTACTACCGCCCCAGGTGGCGAAGAGCCGACATCG 92479 Score = 271 bits (300), Expect = 1e-70 Identities = 226/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| |||| ||| ||||| Sbjct 115349 GAGGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAG 115408 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | ||| | | |||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 115409 CGTATACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA 115468 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| || |||||| | |||||| ||||||||||||||| Sbjct 115469 CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCA 115528 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || Sbjct 115529 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAC 115588 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| | || |||||||||||| Sbjct 115589 GTACTACCGCCCCAGGTGGCGAAGAGCCGACATCG 115623 >seq1989 Length=105340 Score = 208 bits (230), Expect = 1e-51 Identities = 214/278 (77%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 ||| ||| ||| |||||||||| |||||| || | | | | ||||||||| ||| | Sbjct 37403 GAGAAGGATTTCCCGCTTAGATGCTTTCAGCAGTTCTTCTATACCAACTTAGCTACCCGG 37344 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||| ||||| ||| ||||| ||||| ||| ||| |||||||||||| Sbjct 37343 CGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAACCCAGTCCTCTCGTAC 37284 Query 122 TAAGGACAGCTCCTCTCAAATTTC-CT---ACGCCCACGACGGATAGGGACCGAACTGTC 177 || || ||| ||| || | || || || || ||| |||||| ||||||||||| Sbjct 37283 TAGGGTTGGCTTCTCGCAGTTCTCTCTTAAACACCAACGGTAGATAGGAACCGAACTGTC 37224 Query 178 TCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || ||||||||| |||||| ||| ||| || |||| || |||||||| || ||||||||| Sbjct 37223 TCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGG 37164 Query 238 GACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| ||||| |||||||||| || ||| |||||||| Sbjct 37163 GACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 37126 >seq1931 Length=1943052 Score = 102 bits (112), Expect = 1e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| |||||| |||| || |||||||| || ||||||||||||| Sbjct 1641468 GACGTTCTAAACCCAACTCACGTGCCACTTTCATCGGCGAACAACCGAACCCTTGGGACC 1641409 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||| |||||||||| | || |||||||| Sbjct 1641408 TTCTTCAACCCCAGGATGTAATGAATCGACATCG 1641375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780784947640