Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1990 291 2e-76 seq1989 185 2e-44 >seq1990 Length=122890 Score = 291 bits (322), Expect = 2e-76 Identities = 315/410 (77%), Gaps = 23/410 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 86761 TTTACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 86702 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 86701 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 86642 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| ||| |||||| || | ||| Sbjct 86641 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAAGCCATTGCCTCACCA 86582 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| ||| | || ||| ||| ||| Sbjct 86581 ACTAGCTAATCAGACGCAAGCCCCTCC-TTAG---GCGG------ATTCCTCCT-TTTAC 86533 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | ||||| ||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 86532 TCCT--CAGCTTATGGGGTATTAGCAACCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCA 86475 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| | | | | || ||| ||| Sbjct 86474 GGTTCTTACGCGTTACTCACCCGTCCGCCACT-GAAAAC--ACCA-AAAGGTGC------ 86425 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 86424 TTTCCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 86375 Score = 291 bits (322), Expect = 2e-76 Identities = 315/410 (77%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 121341 TTTACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 121400 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 121401 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 121460 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| ||| |||||| || | ||| Sbjct 121461 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAAGCCATTGCCTCACCA 121520 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| ||| | || ||| ||| ||| Sbjct 121521 ACTAGCTAATCAGACGCAAGCCCCTCC-TTAG---GCGG------ATTCCTCCT-TTTAC 121569 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | ||||| ||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 121570 TCCT--CAGCTTATGGGGTATTAGCAACCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCA 121627 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| | | | | || ||| ||| Sbjct 121628 GGTTCTTACGCGTTACTCACCCGTCCGCCACT-GAAAAC--ACCA-AAAGGTGC------ 121677 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 121678 TTTCCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 121727 >seq1989 Length=105340 Score = 185 bits (204), Expect = 2e-44 Identities = 167/209 (80%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 4 CTTTACAACC--CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | || | ||||||||| ||||| || || | ||||||||| ||||| Sbjct 31427 CTTTACAAGCTGCGTTGCCCTTCTTCACTCACGCCATATTGCCGGATCAGGCTTTCGCCC 31368 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 31367 ATTGTCCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 31308 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||||| | || ||| || ||||| Sbjct 31307 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCGTAGGCTTGGTCAGCTTTTACCTAA 31248 Query 182 CCAACTAGCTAATCCCATCTGGGTTCATC 210 ||||||| ||||| | | |||| ||||| Sbjct 31247 CCAACTACCTAATACTACGTGGGCTCATC 31219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222375674240