Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1990 351 3e-94 seq1989 266 1e-68 >seq1990 Length=122890 Score = 351 bits (388), Expect = 3e-94 Identities = 370/480 (77%), Gaps = 19/480 (4%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||||||||||||||||||||| | |||||||||| | ||| |||| | Sbjct 86443 AGTGGCGGACGGGTGAGTAACGCGTAAG-AACCTGCCCTTGGGAGGGGGACAACAGCTGG 86501 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| | ||||||||| |||| | | | ||| ||| | || |||| Sbjct 86502 AAACGGTTGCTAATACCCCATAAGCTGA-------GGA--GTAAAAGGAGGAA---TCCG 86549 Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202 | || |||| | | ||||||||||||||||||||| ||| || ||||||||||||| Sbjct 86550 CC--TA-AGGAGGGGCTTGCGTCTGATTAGCTAGTTGGTGAGGCAATGGCTTACCAAGGC 86606 Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 ||||||||||||| | |||||||| ||||| |||||| ||| |||||||||||| ||| Sbjct 86607 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAG 86666 Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||||||||||||||||| || | |||||||| ||||||||| | ||||| Sbjct 86667 ACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAA 86726 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAAT 380 |||||||| | ||||||| ||||||||||| || | |||| ||||| ||| Sbjct 86727 TGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTAAACTCCTTTTCTCAGAGAAGAAGCAAT 86786 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| |||||| |||| ||||||||| ||||||||||||||||||| || || Sbjct 86787 GACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAG 86846 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||||||||||| | | |||||||||| || |||||||| || ||||||| Sbjct 86847 GATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 86905 Score = 351 bits (388), Expect = 3e-94 Identities = 370/480 (77%), Gaps = 19/480 (4%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||||||||||||||||||||| | |||||||||| | ||| |||| | Sbjct 121659 AGTGGCGGACGGGTGAGTAACGCGTAAG-AACCTGCCCTTGGGAGGGGGACAACAGCTGG 121601 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| | ||||||||| |||| | | | ||| ||| | || |||| Sbjct 121600 AAACGGTTGCTAATACCCCATAAGCTGA-------GGA--GTAAAAGGAGGAA---TCCG 121553 Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202 | || |||| | | ||||||||||||||||||||| ||| || ||||||||||||| Sbjct 121552 CC--TA-AGGAGGGGCTTGCGTCTGATTAGCTAGTTGGTGAGGCAATGGCTTACCAAGGC 121496 Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 ||||||||||||| | |||||||| ||||| |||||| ||| |||||||||||| ||| Sbjct 121495 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAG 121436 Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||||||||||||||||| || | |||||||| ||||||||| | ||||| Sbjct 121435 ACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAA 121376 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAAT 380 |||||||| | ||||||| ||||||||||| || | |||| ||||| ||| Sbjct 121375 TGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTAAACTCCTTTTCTCAGAGAAGAAGCAAT 121316 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| |||||| |||| ||||||||| ||||||||||||||||||| || || Sbjct 121315 GACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAG 121256 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||||||||||| | | |||||||||| || |||||||| || ||||||| Sbjct 121255 GATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 121197 >seq1989 Length=105340 Score = 266 bits (294), Expect = 1e-68 Identities = 257/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| ||| |||||| | ||||| |||| | || || Sbjct 31235 ATTAGGTAGTTGGTTAGGTAAAAGCTGACCAAGCCTACGATGCTTAGCTGGTCTTTTCGG 31294 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||| Sbjct 31295 ATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGG 31354 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| ||| ||||||||| |||||||||| | |||| ||||||| || ||||| | | Sbjct 31355 AATCTTGGACAATGGGCGAAAGCCTGATCCGGCAATATGGCGTGAGTGAAGAAGGGCAAC 31414 Query 348 G--GGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| |||| ||| || | ||||||| Sbjct 31415 GCAGCTTGTAAAGCTCTTTCATCGAGTGTGCGATTGTGACAAGACTCGAATAAGAAGCCC 31474 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| ||||||||| ||||| |||||| | Sbjct 31475 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCTAGTGTTATTCGGAATGA 31534 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 31535 CT-AGGCGTAAAGGGCACGTAGGCGGT 31560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497570197760