Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1990 178 4e-42 seq1989 167 8e-39 >seq1990 Length=122890 Score = 178 bits (196), Expect = 4e-42 Identities = 374/549 (68%), Gaps = 34/549 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 90635 GACCCGAACCTGGGTGATCTAACCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 90694 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || | Sbjct 90695 GTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA 90754 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC- 213 | ||| || |||||||||||| |||||| || || | || || | | Sbjct 90755 CTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAG---GCGCAGCAGTTGACT 90811 Query 214 --ACCATC-GGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCAT 270 || ||| |||||| ||||||||| | | | ||| | | | ||||||| | Sbjct 90812 GGACTATCTAGGGGTAAAGCACTGTT-TCGGTGCGGGCTGCGAGAGCGGTACCAAATCGA 90870 Query 271 TGCAAACTCCGAATGC-GCATCAGTT-------TTACCGCGGG------------AGTGA 310 |||||||| |||| | || | | | | | ||| ||||| Sbjct 90871 GGCAAACTCTGAATACTAGATATGATCCCCAAATAATAGGGGGTAATGGTCAACCAGTGA 90930 Query 311 GGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCC 370 | |||| | |||| | | | | ||||| || | || || | ||||||||||| Sbjct 90931 GACGGTGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGGCC 90990 Query 371 CCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGG 430 || ||||||| ||||||| | || || || || ||| |||||||| |||| ||| | Sbjct 90991 CCTAAATGACCGCTAAGTGGTA--AAGGAGGTAGGAGTGCAAAGACAGCCAGGAGGTTTG 91048 Query 431 CTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCG 490 | | |||||||||| | || ||||||||||||| |||||||| || || || ||| Sbjct 91049 CCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCAAGCGCTCTTGCG 91107 Query 491 TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATAT-GATCGG 549 || || | |||| | |||| |||| ||||||| ||||||| | | || ||||| Sbjct 91108 CCGAAGATGAACGGG-ACTAAGCGGTCTGCCGAAGCTGTGGGAT-GTCAAAATACATCGG 91165 Query 550 TAGGGGAGC 558 ||||||||| Sbjct 91166 TAGGGGAGC 91174 Score = 178 bits (196), Expect = 4e-42 Identities = 374/549 (68%), Gaps = 34/549 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 117467 GACCCGAACCTGGGTGATCTAACCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 117408 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || | Sbjct 117407 GTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA 117348 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC- 213 | ||| || |||||||||||| |||||| || || | || || | | Sbjct 117347 CTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAG---GCGCAGCAGTTGACT 117291 Query 214 --ACCATC-GGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCAT 270 || ||| |||||| ||||||||| | | | ||| | | | ||||||| | Sbjct 117290 GGACTATCTAGGGGTAAAGCACTGTT-TCGGTGCGGGCTGCGAGAGCGGTACCAAATCGA 117232 Query 271 TGCAAACTCCGAATGC-GCATCAGTT-------TTACCGCGGG------------AGTGA 310 |||||||| |||| | || | | | | | ||| ||||| Sbjct 117231 GGCAAACTCTGAATACTAGATATGATCCCCAAATAATAGGGGGTAATGGTCAACCAGTGA 117172 Query 311 GGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCC 370 | |||| | |||| | | | | ||||| || | || || | ||||||||||| Sbjct 117171 GACGGTGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGGCC 117112 Query 371 CCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGG 430 || ||||||| ||||||| | || || || || ||| |||||||| |||| ||| | Sbjct 117111 CCTAAATGACCGCTAAGTGGTA--AAGGAGGTAGGAGTGCAAAGACAGCCAGGAGGTTTG 117054 Query 431 CTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCG 490 | | |||||||||| | || ||||||||||||| |||||||| || || || ||| Sbjct 117053 CCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCAAGCGCTCTTGCG 116995 Query 491 TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATAT-GATCGG 549 || || | |||| | |||| |||| ||||||| ||||||| | | || ||||| Sbjct 116994 CCGAAGATGAACGGG-ACTAAGCGGTCTGCCGAAGCTGTGGGAT-GTCAAAATACATCGG 116937 Query 550 TAGGGGAGC 558 ||||||||| Sbjct 116936 TAGGGGAGC 116928 >seq1989 Length=105340 Score = 167 bits (184), Expect = 8e-39 Identities = 312/452 (69%), Gaps = 15/452 (3%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||||||||| ||||||||| ||||| |||| ||||| | || |||| ||| |||| Sbjct 35389 GACCCGAAACTGAGTGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACGGGCCTTGGA 35448 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 35449 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 35508 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT-CAAGTAT 212 || |||||| || |||||||||| || ||||| ||||| |||||| || | || | Sbjct 35509 AACCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAGGTAGAGCGTATAATGTT 35568 Query 213 CACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTG 272 | | | ||||||||||| |||||||| | | | | ||| | || | Sbjct 35569 TATGGCCTGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCAAAGCTTGACCGACCCCAAG 35628 Query 273 CAAACTCCGAA---TGCGCATCAGTTT-TACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328 |||||||||| || ||| | ||| ||| || || ||||||||||| | Sbjct 35629 GAAACTCCGAATACTGGCCATTATTTTGTAC------AGACAGACTTTGGGTGCTAAGAT 35682 Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT 388 ||| | ||||| || | || || | ||||||| || || | || ||| Sbjct 35683 CCGAAGTCAAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCTTAAGCAATCACTTAGT 35742 Query 389 TAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCA 448 || || ||||| || | |||| | |||| || |||||||||||||||| || Sbjct 35743 GGAA--AAGGAAGTAATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCA-TCC 35799 Query 449 TTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| |||| |||||| |||||||| ||| || Sbjct 35800 TTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 35831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689566376960