Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1990 140 6e-31 seq1989 102 1e-19 >seq1990 Length=122890 Score = 140 bits (154), Expect = 6e-31 Identities = 182/246 (74%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| || Sbjct 89973 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCG 90032 Query 68 GGGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG 126 ||||| ||| ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 90033 GGGAGCTGA--AAATAAGCATAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTG 90085 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | ||| |||||||| |||||| | |||| || ||| ||||||||||||||||| Sbjct 90086 A---ACTGC-TGCTGAATTCATAGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTT 90141 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | |||||||| ||||| |||||||||||||||| Sbjct 90142 AGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAC 90201 Query 246 GAGCCT 251 ||||| Sbjct 90202 TAGCCT 90207 Score = 140 bits (154), Expect = 6e-31 Identities = 182/246 (74%), Gaps = 13/246 (5%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| || Sbjct 118129 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCG 118070 Query 68 GGGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG 126 ||||| ||| ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 118069 GGGAGCTGA--AAATAAGCATAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTG 118017 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | ||| |||||||| |||||| | |||| || ||| ||||||||||||||||| Sbjct 118016 A---ACTGC-TGCTGAATTCATAGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTT 117961 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | |||||||| ||||| |||||||||||||||| Sbjct 117960 AGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAC 117901 Query 246 GAGCCT 251 ||||| Sbjct 117900 TAGCCT 117895 >seq1989 Length=105340 Score = 102 bits (112), Expect = 1e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||| Sbjct 34744 GCGAACTGAAACATCTAAGTAGCTAAAGGAAAGGAAATCAACCGAGACTCCGTTAGTAGC 34803 Query 229 GGCGAGCGAAATGGGATGAGCCTTTACGAGA 259 ||||||||||| |||| || |||| |||| Sbjct 34804 GGCGAGCGAAAGCGGATTAGGCTTTGTGAGA 34834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918381723840