Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1990 232 2e-58 seq1989 215 2e-53 >seq1990 Length=122890 Score = 232 bits (256), Expect = 2e-58 Identities = 393/563 (70%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||| ||| |||| |||||||||||||||| ||| |||||||| |||||| || Sbjct 92344 TCGACTGGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCGAAGGCTGATTTCC 92285 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 92284 GTCCAGCCTGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 92226 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGC-CAAGGTTAGATATCCA 179 ||||| | ||| | |||||||| || | || | | |||||||||| || | Sbjct 92225 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAAATTGACACAAGGTTAGAATTCTA 92166 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | |||||||||||||| | | ||| | || | | || | || | | Sbjct 92165 GCTCTTCTAGAGTGGTATTTCACTGATGGCTCGAGCCCCCCCGGAAGGGGGCCTTCTTCG 92106 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 || ||||||| || | ||| | || || |||||| ||| | | ||| ||| | | Sbjct 92105 CCTTCCACCTAAGCTGCGCAAGAAGAGCCCAAAGCCAATCCCAGGGAACAGTAAAGCTTC 92046 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||| |||| | || | | ||||||| || | | |||||||| Sbjct 92045 ATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACC 91986 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || | ||||||| | || |||||||||| ||||||| ||||||||||||| Sbjct 91985 GAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTAC 91927 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 91926 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCT 91867 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 || | | || || | || | | |||| | ||||||||||| |||| Sbjct 91866 TCGGTCGCTGGCTTCTC------TGTCATCAGATCACCAACTTCCTTAACCTTCCGGCAC 91813 Query 538 CGGGCAGGCGTCAGTCCGTATAC 560 ||||||||||||| || |||| Sbjct 91812 TGGGCAGGCGTCAGCCCCCATAC 91790 Score = 232 bits (256), Expect = 2e-58 Identities = 393/563 (70%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||| ||| |||| |||||||||||||||| ||| |||||||| |||||| || Sbjct 115758 TCGACTGGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCGAAGGCTGATTTCC 115817 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 115818 GTCCAGCCTGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 115876 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGC-CAAGGTTAGATATCCA 179 ||||| | ||| | |||||||| || | || | | |||||||||| || | Sbjct 115877 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAAATTGACACAAGGTTAGAATTCTA 115936 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | |||||||||||||| | | ||| | || | | || | || | | Sbjct 115937 GCTCTTCTAGAGTGGTATTTCACTGATGGCTCGAGCCCCCCCGGAAGGGGGCCTTCTTCG 115996 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 || ||||||| || | ||| | || || |||||| ||| | | ||| ||| | | Sbjct 115997 CCTTCCACCTAAGCTGCGCAAGAAGAGCCCAAAGCCAATCCCAGGGAACAGTAAAGCTTC 116056 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||| |||| | || | | ||||||| || | | |||||||| Sbjct 116057 ATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACC 116116 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || | ||||||| | || |||||||||| ||||||| ||||||||||||| Sbjct 116117 GAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTAC 116175 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 116176 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCT 116235 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 || | | || || | || | | |||| | ||||||||||| |||| Sbjct 116236 TCGGTCGCTGGCTTCTC------TGTCATCAGATCACCAACTTCCTTAACCTTCCGGCAC 116289 Query 538 CGGGCAGGCGTCAGTCCGTATAC 560 ||||||||||||| || |||| Sbjct 116290 TGGGCAGGCGTCAGCCCCCATAC 116312 >seq1989 Length=105340 Score = 215 bits (238), Expect = 2e-53 Identities = 344/490 (70%), Gaps = 34/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||||||||| || ||||||||| ||||||| |||||| Sbjct 36916 ACCTTCGCACACCTCCGTTACTCTTTGGGAGG-CATCCGCCCCAGATAAACTAACCACCA 36858 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 ||| |||||| | | | | | ||| |||||| |||| | |||||||| Sbjct 36857 TGCAGTGTCCCGC-CTCTGTT--TCGGCA---GTTAGACATCCTTAGACGAAAGAGTGGT 36804 Query 196 ATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTA 255 ||||||| | | | | |||| | | ||| ||||||||||||||| Sbjct 36803 ATTTCAAGATTGGCGG---------TGACGTG-CAACGTCACCACCTCCCACCTATCCTA 36754 Query 256 CACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTC 314 |||| | | || || | | |||||||||| ||||| | ||||||||| |||| Sbjct 36753 CACATTCAATCAAGGTTGTCACTGCAAAGCTATAGTAAAGGTGCACGGGGTCTTACCGTC 36694 Query 315 CTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGA 374 |||| | | ||||||| || | | ||||||||| | | | || | |||| Sbjct 36693 TAGCCGTTGGTACTCCGCATCTTCACGGAGAGTTCAATTTCACTGAGTCCATGTTGGAGA 36634 Query 375 CAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 434 |||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||| Sbjct 36633 CAGCAGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGC 36574 Query 435 TACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCAC 494 |||||||||| |||| |||||| ||||||||||| |||||||| ||| |||| Sbjct 36573 TACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCGAAGCCT--- 36517 Query 495 ACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCC 554 | | ||| | |||| || |||||||||||||||||||| ||||| | Sbjct 36516 ATAACACTT-------------CTCCTTTTCACCTTCCAGCACCGGGCAGGTGTCAGACT 36470 Query 555 GTATACCTCG 564 ||||| ||| Sbjct 36469 CTATACATCG 36460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702366122240