Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1990 152 1e-34 seq1989 134 3e-29 >seq1990 Length=122890 Score = 152 bits (168), Expect = 1e-34 Identities = 210/295 (71%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 86832 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 86784 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || | ||||| ||||||| | |||| | ||||| ||| ||||| Sbjct 86783 GC------TTCTTCTCTGAGAAAAGGAGTTTACGACCCGTGGG-CCTTCTACCTCCACGC 86731 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 86730 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 86671 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 86670 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 86611 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || ||| ||| || || | || |||| ||||| ||||| ||| || Sbjct 86610 CGTCGCCTTGGTAAGCCATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 86556 Score = 152 bits (168), Expect = 1e-34 Identities = 210/295 (71%), Gaps = 18/295 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 121270 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 121318 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || | ||||| ||||||| | |||| | ||||| ||| ||||| Sbjct 121319 GC------TTCTTCTCTGAGAAAAGGAGTTTACGACCCGTGGG-CCTTCTACCTCCACGC 121371 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 121372 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 121431 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 121432 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 121491 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || ||| ||| || || | || |||| ||||| ||||| ||| || Sbjct 121492 CGTCGCCTTGGTAAGCCATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 121546 >seq1989 Length=105340 Score = 134 bits (148), Expect = 3e-29 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 79 ATAAAAGAAGTTTACAATC--CGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAG 136 || ||||| ||||||| | ||| | ||||| || |||||| | | || || |||| Sbjct 31436 ATGAAAGAGCTTTACAAGCTGCGTTGC-CCTTCTTCACTCACGCCATATTGCCGGATCAG 31378 Query 137 ACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196 || ||| |||||| |||| ||||| |||||||||||||||||||||| ||| ||||||| Sbjct 31377 GCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTC 31318 Query 197 TCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGC 256 ||||| ||| ||||| || | ||| ||| | ||| ||||||||||| ||| || Sbjct 31317 TCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCGTAGGCTTGGTCAGC 31258 Query 257 CGTTACCCCGCCTACTACCTAAT 279 ||||| || |||||||||| Sbjct 31257 TTTTACCTAACCAACTACCTAAT 31235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068778730880