Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1794 149 5e-31 seq1886 122 7e-23 seq1925 102 6e-17 >seq1794 Length=856596 Score = 149 bits (164), Expect = 5e-31 Identities = 311/461 (67%), Gaps = 2/461 (0%) Strand=Plus/Minus Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 ||||||| | |||||| | || || ||||||||| || | ||| | |||| Sbjct 304000 TTCGTAACGGGTGTAGAGCTTCTCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGC 303941 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | || || | || ||||| | |||| || || ||||| | ||| || || || Sbjct 303940 CTCATTGGGGCAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTC 303881 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| || | ||||| ||||| || || | | ||||| | || ||||| || Sbjct 303880 TGGAATCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTT 303821 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 | | || || | || || || ||||||||||| || ||||| ||||| ||||| | Sbjct 303820 CCTAAGATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGC 303761 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 |||| | | ||||||||||| ||||||||||| ||||| | ||||| || | ||| Sbjct 303760 GCCCTTCCTCTTGCCGCCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAA 303701 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCC 66590 |||||| | || ||| ||||| | || || ||||| ||| | | | | || || | Sbjct 303700 CATCGGGATGATCCCATTAGAAGTCCCGTTTGTGCC-ACGAATGTAGCTGCCAGTAGCAC 303642 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGG 66650 | |||| ||||| || |||||| ||||| || | ||| || ||||||| || Sbjct 303641 GGATATTATGAACTGACAAACCAATTCCACCAGCTGACTTGCTAATAACAGCACACTCCT 303582 Query 66651 CCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 || || | | || || |||||| ||| || ||| || Sbjct 303581 TCAGAGTGTCGTAGATACCCTCAATGCTGTCGCCTTTGGTG 303541 >seq1886 Length=1372085 Score = 122 bits (134), Expect = 7e-23 Identities = 238/342 (70%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 |||||||| |||||||| || || ||||| | ||||| || ||||||||| | | | Sbjct 694309 TTCTACGGATTCCAGATAGCTATTGAGAACATTCACTCAGAAATGTACAGTTTGTTGTTG 694368 Query 61360 GATACGTACATCAGGGAGCGGGCGGA-ACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 || ||||||| | || | || || | | | | || | ||||||||||| ||||| || Sbjct 694369 GAGGCGTACATTAAAGATCAAGCTGAGAAGAGCA-GACTTTTCAATGCCATTGAGACCAT 694427 Query 61419 ACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 ||| ||| || |||| || || ||||| | || |||||| |||| | | | Sbjct 694428 ACCTTGCGTTG-CTAGGAAGGCTGACTGGGCTCTAAAATGGATCGACAGT---GCTGGGA 694483 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATC 61535 |||| || || | ||||| || || |||||||| | | ||||||| ||| Sbjct 694484 GCTTTGCAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAG-GGAGT 694542 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 |||| ||| ||||||||| | ||||| | || |||||||| || || || || ||| Sbjct 694543 TTTTG-CGCCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAA 694601 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || | || ||||| || |||||| |||| || |||||||| Sbjct 694602 CGAACTCATCTCACGAGATGAGGGCCTGCACTGCGATTTTGC 694643 >seq1925 Length=1847415 Score = 102 bits (112), Expect = 6e-17 Identities = 235/352 (67%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || || | ||| ||||| |||| | || ||||| |||| || || || || ||| Sbjct 481318 GGGCAGAACAGAGACCATGTGCCATTATTTTGGACACGTTGCATGAAAAGGTCGGGGATC 481377 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || | ||||| | ||| || |||| ||||| | ||||| || || || | | Sbjct 481378 CAAAGTCCATAGAACAAATCCCGAGCTCTACTTTCCTCCTTCCCGTGGTTCTTTCGAAGG 481437 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | | || ||||| || |||||||| ||||| ||||| || || |||| ||| | Sbjct 481438 TCCAACCATTCGAAGATATCTGCATGCCAGGGTTCAAGGTAAATTGCAAACGCACCCTTC 481497 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 | || |||||||| ||||| || || || || | || || || | || ||| || Sbjct 481498 CTCTTACCGCCACCCTGGTCAACATACCGGGCAGTGTCATTAAACACCCTCAGCATGGGG 481557 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCC--TCGTGCCCGTATAT 66596 | | || || || | ||||||||||| |||| | || ||||| || || | Sbjct 481558 ATTATACCATTGGAAGTTCCATTGGTGCCCCGGATGTAGCTGCCTGTCGTG--CGGATGT 481615 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATC 66648 || ||| ||| ||||| |||||||||| ||| || ||||||| || Sbjct 481616 TATGGACAGACAGGCCAATGCCACCGGCCGACTTGCTAATTACAGCACACTC 481667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| ||||| || || | ||||||||| || ||||||||||| ||| |||| || Sbjct 480576 GGAAGTGCAAGTGAAGCCAAGTTGCAGACGGCAGTCTCGTCAGGACTTGTAAACTCCACT 480635 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 |||||||| || ||||| | || | ||||| |||| ||| || || || ||||| | Sbjct 480636 ATTTCGGTACAAAGATT--GGAAGACTTGATGGTTCCCAGATTTTGCTGGTTGCTCTTTC 480693 Query 66120 GATTGCATGCATCCTT 66135 ||||| |||||||| Sbjct 480694 TGTTGCAGGCATCCTT 480709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558357733600