Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1990 708 0.0 >seq1990 Length=122890 Score = 708 bits (784), Expect = 0.0 Identities = 758/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||| ||||| || || | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| || ||||| || | |||||| |||| || || | || ||||| || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| || || ||||| |||||||| || || ||||||| || | ||||| ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||||||||||| ||| | | || |||| || || ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCA---ACTCGT 160098 ||||||||| || || | || || ||||| || ||||||||||||| | | | |||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 160099 AGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTA 160158 ||||| ||||| | | || | | ||| |||||||||||||||||||| || Sbjct 53933 --TCTTC-ACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 160159 CCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTC 160218 |||| | ||||||||||| |||||| ||||||||| || ||||| || || |||||| | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 160219 TGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGG 160278 |||||| ||| | ||||||| | ||||| || ||||| || | ||||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 160279 TATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCA 160338 |||||||||||||| |||| ||| |||| |||||||| |||||||| ||||||||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 160339 TCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCA 160398 || ||||||||||| ||||| ||||| ||||||||||| ||||| ||| ||||||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 160399 TGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTA 160458 ||| || | || ||||| ||| | || | || || || || | |||||| ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 160459 TGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTT 160518 ||||||||||| |||||||||||||| |||||||||||||| || || || || ||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 160519 CGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCT 160578 ||| | || || |||||||| || |||||||||||| || ||| | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 160579 CGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATT 160638 |||||||||||||| || || |||||||||||||| | ||| | || ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 160639 CAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAA 160698 ||| | || ||||||||||||||||| || | | |||| ||||| | ||| | || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 160699 CACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAA 160758 ||||||||| ||| | | ||||| ||| || || |||||||| ||||| || ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 160759 CGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 |||||||||||||||||| ||| | ||| ||| ||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 554 bits (614), Expect = 5e-153 Identities = 732/1013 (72%), Gaps = 9/1013 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 || |||||||| | | |||| ||||| || ||||| || |||||||| || | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || |||||| || || | || || ||| |||| || || ||||| | || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTT 161706 ||||| |||||| | ||||| || ||| | || ||| |||||||| || || || ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 161707 AGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAA 161766 ||||| ||| | | | | ||||| | | || | |||||||| || || ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 161767 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGG 161826 || |||||| | ||| ||| | || || || |||| ||| || || || || || Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 161827 GCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA-- 161884 ||||| ||| | || || || ||| | || || ||||| |||||| | ||| ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTACA 44097 Query 161885 --TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 161942 | |||||||| || || |||||||| ||||| || |||||||||||||| || || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 161943 TCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGC 162002 | | || || || || || || || ||||| || || || ||||| ||||| || Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 162003 TATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCA 162062 |||||| | ||| | | ||| | ||||||||||| || ||||| | || || || || Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 162063 CATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGAC 162122 |||||||| || || || ||||||| | |||| | | | ||||||||| |||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 162123 TGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTC 162182 ||| ||||| || | | |||||||||| |||||||| ||| || ||| || | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 162183 TACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTT 162242 || ||| || || ||||| || |||||||| || |||||||||||||| || ||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 162243 CGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCAT 162302 |||| |||| ||| ||| || ||||||||||||||||||||||| || || || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 162303 GGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGA 162362 ||| | |||| ||| |||| || | |||| | ||| | ||| | || ||||| || Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 162363 CTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAA 162422 ||||| |||||||| ||||||||||| || || |||||||||||||| || ||||| || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 162423 GAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGA 162482 ||||| || | ||||||||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 162483 GAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || |||||||||| ||||| ||||| || | || ||||| || | ||||| Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 43445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551362284522000