Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1990 690 0.0 >seq1990 Length=122890 Score = 690 bits (764), Expect = 0.0 Identities = 745/981 (76%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||||| ||||| ||| ||| | ||||| || || |||| ||||||||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||| ||||| || | ||||||| |||| || || | || || | || || || Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 |||||||| |||||||| ||||| || || || ||||||| || | || |||||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||||||||||| |||| | ||||| | || || || ||| | ||||||||||| || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || || | ||||| ||||| |||||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 189150 CTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | |||||| | | || | || || |||||||||||||||||||||||| || Sbjct 53933 TCTTCACTTCTTACTTGG--TGTA-GCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATC 189266 |||| | |||||||||||||||||| |||| || || || |||||||| || || | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 189267 CGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGG 189326 || || || || |||| || |||||||||| |||||||||| ||||| || || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 189327 TATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 189386 ||| ||| || ||||||| |||| |||| |||||||| || ||||||||||| ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 189387 CCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCA 189446 ||| ||||||||||| || || || ||||| |||||||| || || ||| || ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 189447 TGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTA 189506 |||||| | || || || | | |||||||| ||||| | ||||| ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 189507 TGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTT 189566 |||||||||||||| ||||| |||||||| ||||||||||| |||||||| || || || Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 189567 CGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCT 189626 ||| | | || |||||||| || || |||||||| ||||| | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 189627 CGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATT 189686 ||||| ||||| || || ||||||||||| || || | || ||||||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 189687 CAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAA 189746 |||| | || || ||||||||||| ||||| || |||| |||||||||||||| | || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 189747 CACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAA 189806 ||| ||||| ||| | ||||||||||| |||||||||||||| |||||||| ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 189807 CGCTCACAACTTCCCTCTTGA 189827 |||||||||||||||||| || Sbjct 53276 CGCTCACAACTTCCCTCTAGA 53256 Score = 553 bits (612), Expect = 2e-152 Identities = 726/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 ||||||||||| | | |||| || ||||| ||||| ||||||||||| || | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118 || |||||| | | | ||||| ||| |||| || || || |||| || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTG 190178 || || || ||| | || || ||| | || ||| ||||||||| || || ||||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 190179 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAA 190238 || || |||||| || | | | ||||| | | ||| | |||||||| ||| | ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 190239 GGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 190298 || |||||| | ||| ||| | || || || ||| |||| || || || || || Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 190299 GCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 190356 ||||| ||| |||| || || ||| | || || ||||| || || | ||| ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTACA 44097 Query 190357 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 190414 | |||||||| || || ||||| || ||||| || || |||||||||||| || || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 190415 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGC 190474 | | || ||||| || |||||||| ||||||| || || || || ||||| ||||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 190475 GATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCA 190534 || ||||| ||| | | ||||| || || |||||||||||||| | ||||| || || Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 190535 CATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGAC 190594 |||||||| ||||| || || |||||| || || | | || || ||||||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 190595 TGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTC 190654 |||||| |||||||| | |||||||||||| ||||| || || || || || | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 190655 TACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTT 190714 || ||| ||||| || ||||| ||||| || || ||||||||||||||||||||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 190715 TGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTAT 190774 |||||||| || ||| || | |||||||||||||||||||| ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 190775 GGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 190834 ||| | |||| | | || || | ||||| | ||| | || | || |||||||| Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 190835 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAA 190894 ||||| || || || || | ||||| ||||| || || || || ||||||||||| || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 190895 AAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGA 190954 |||||| ||| | ||||||||| ||||| | ||| ||||| || ||||| || ||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 190955 GAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||| ||||||| ||||| || || | ||| | || |||||||| Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634064227260000