Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1990 792 0.0 >seq1990 Length=122890 Score = 792 bits (878), Expect = 0.0 Identities = 773/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||||| ||||| || || | || || |||||| |||| ||||||||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 ||||| || ||||| || | ||||| |||| ||||||| ||| ||| |||| ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||||||||| || ||| ||||||| || | || |||||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 ||||||||||| ||| | | ||| |||| || || ||| | ||||||||||| || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||| || ||||||||||||| ||||| |||||||||||| | | |||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 |||||||| | | || | |||||||||||||| |||||||||||| |||||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 160931 CCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGC 160990 | || ||||| || |||||| ||||||||||| || |||||||| ||||| | ||| Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 160991 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTAT 161050 || ||| | |||| || | |||||||| |||||||| |||||||| | || || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 161051 CTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCC 161110 ||||||||| |||||||||||| |||| ||||| || |||||||||||||| |||||||| Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 161111 CTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGG 161170 ||||||||| | ||||| |||||||| |||||||| ||||| ||| || |||||||| Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 161171 TTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGG 161230 ||| | || ||||| | | |||||||| |||||||| ||||| ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 161231 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGG 161290 |||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||| || Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 161291 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 | | | || |||||||||||| ||| |||||||| ||||| || ||||||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 161351 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAA 161410 || |||||||| || |||||||||||||||||| | ||| || ||| ||||| ||||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAA 53394 Query 161411 CCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 161470 | | ||||| |||||||||||||| || | | || |||| || || | ||||| Sbjct 53393 CTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACAC 53334 Query 161471 CTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGC 161530 ||||||||| | | || ||||||||||||||||||||||| ||||| || ||||| || Sbjct 53333 TTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGC 53274 Query 161531 TCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||||||||||||| || | ||| ||| ||| Sbjct 53273 TCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 569 bits (630), Expect = 2e-157 Identities = 733/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 |||| |||||||| | | |||| || ||||| ||||| ||||||||||| || | |||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| |||||| || | | ||||| ||| |||| |||||||| ||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 164017 GGTACACCCACGGTCTCGCGTCTAG---TTACCTTGAGGGTGCTAATTTCCTTACAGCGG 164073 |||| || || || | || ||| ||| | || ||| |||||| || || || | Sbjct 44334 GGTATACTCATGGATTGGC---TAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTG 44278 Query 164074 CTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 164133 |||| || || |||||| || | | | ||||| | | ||| | |||||||| || Sbjct 44277 CTGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAG 44218 Query 164134 CTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCC 164193 | || || || |||| | | ||||| ||| | || || || ||| |||| || || | | Sbjct 44217 CACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTC 44158 Query 164194 ACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAG 164253 | ||| |||| ||| | || || || ||| | || || ||||| |||| | ||| Sbjct 44157 ATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTAC 44098 Query 164254 GTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTT 164313 | ||||| || || || ||||| || ||||| || |||||||| ||||| || | Sbjct 44097 AATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 44038 Query 164314 TCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGG 164373 | | || ||||| || || ||||| ||||||| ||||| || ||||| || || | Sbjct 44037 TTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAG 43978 Query 164374 CGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCC 164433 | || ||| ||||| | || ||| |||||||||||||||||||||| | ||||| || | Sbjct 43977 CAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTC 43918 Query 164434 ATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTA 164493 |||||||||| ||||| || || | || | ||||||| | ||||||||||||||||| | Sbjct 43917 ATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAA 43858 Query 164494 CCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGC 164553 | ||||| |||||||| |||||||||||||| ||||||| ||| || || | | Sbjct 43857 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACC 43798 Query 164554 CTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTT 164613 | |||||| ||||| ||||| || ||||| || || ||||| ||||||||||| || | Sbjct 43797 CAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCT 43738 Query 164614 TTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCA 164673 | ||| |||| || || || ||||||||||| ||||||||||| ||||| || || | Sbjct 43737 TCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAA 43678 Query 164674 TGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATG 164733 || | |||| ||| ||||||| | | ||| | || | ||| | || ||||||| Sbjct 43677 CTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATG 43618 Query 164734 ATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGA 164793 ||||||| |||||||| ||| | ||||| || || ||||||||||| || || || || | Sbjct 43617 ATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTA 43558 Query 164794 AGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACG 164853 | || || || || |||||||| | ||||| |||||||| | ||| ||||| || | Sbjct 43557 AAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATG 43498 Query 164854 AATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||||| |||||||| ||||| || | || ||||| || ||| Sbjct 43497 AAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559314086716000