Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1820 87.8 2e-12 seq1812 87.8 2e-12 >seq1820 Length=971917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 162580 AACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGC 162639 |||||||| || ||||| | ||| | || || || || ||||| ||||| Sbjct 565961 AACTACAGAGAGGCCTATGGTCTTTTTGCTTGTAATGGGATCCTCTTCAACCACGAGTCA 565902 Query 162640 TCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGT 162699 ||||||||||||||| || ||||| | || || ||||| | || |||| Sbjct 565901 CCACGCAGAGGAGAGAACTTTGTCACCAGAAAAATTACTCGAGCAATTGGTCGTATTAAG 565842 Query 162700 GTGGGACTCCA-AAGTGA-TCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGAC 162757 | || ||||| ||| | ||| | ||||| ||||| || || ||||| ||||| Sbjct 565841 ATTGGGCTCCAGAAGAAACTCTTC--CTTGGTAACCTGAAGGCATCTCGTGATTGGGGCT 565784 Query 162758 ACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATT 162817 || ||| ||||| |||| ||||||| | ||| | ||||| |||||||||||||||| Sbjct 565783 TTGCTGGAGATTACGTTGAGGGTATGTGGCTTATGTTGCAGCAGGAGAAGCCAGATGATT 565724 Query 162818 ATGT 162821 |||| Sbjct 565723 ATGT 565720 >seq1812 Length=932957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 162580 AACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGC 162639 ||||||||||| ||| | | | ||| | | || ||||| ||||| ||||| Sbjct 171414 AACTACAGGGAGGCCTACGGCCTGTTTGCTTGCAATGGGATTCTTTTCAACCACGAGTCT 171473 Query 162640 TCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGT 162699 ||||||| || |||| || ||||| | ||||| ||| || | ||| || | Sbjct 171474 CCACGCAGGGGTGAGAACTTTGTCACCAGGAAGATTACCCGCGCAATTGGCCGCATCAAG 171533 Query 162700 GTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACAC 162759 | ||||| || | | || ||||||||||| || ||| ||||| |||||| Sbjct 171534 ATTGGACTTCAGAAGAAGCTTTTCCTTGGAAACCTGAAGGCCTCTCGTGATTGGGGATTT 171593 Query 162760 GCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTAT 162819 || ||||||||| |||| |||||| | ||| | |||||||| ||||| ||||| || Sbjct 171594 GCTGGAGACTACGTGGAGGGCATGTGGCTCATGTTGCAGCAAGACAAGCCTGATGACTAC 171653 Query 162820 GTGATCGCAACTG 162832 || | || |||| Sbjct 171654 GTTCTTGCCACTG 171666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691441999952400