Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq73225 277 3e-72 seq73850 248 1e-63 seq95143 230 4e-58 seq37609 174 2e-41 seq104604 147 3e-33 seq48559 147 3e-33 seq37160 143 4e-32 seq82439 125 1e-26 seq39035 122 1e-25 seq60538 93.3 6e-17 seq86124 86.0 9e-15 seq50497 86.0 9e-15 seq23463 86.0 9e-15 seq4654 78.8 1e-12 seq27689 75.2 2e-11 >seq73225 Length=459 Score = 277 bits (306), Expect = 3e-72 Identities = 202/229 (88%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| | Sbjct 320 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATAACTCGCATTTACTAGGAATT-C 263 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| |||||||||||||||||||| |||||||| | ||||||| |||| Sbjct 262 CTCGTTGAAGATCAATAATTGCAATGATCTATCCCCGTCACGATGGAGTTTCAAAAGATT 203 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | || ||| | ||| | ||||||||||| ||||||||||||| |||||| Sbjct 202 ACCCAAGCATTTCAGCCCATGTG-TGCACTCGTTGAATCCATCAGTGTAGCGTTCGTGCG 144 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 143 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCTTTAAACTTCC 95 >seq73850 Length=1700 Score = 248 bits (274), Expect = 1e-63 Identities = 192/222 (86%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||||| |||||||||| || || |||||||||| |||||||||||| |||||||| Sbjct 492 GGGCAGGGAGGTAGTCAACGAGATCT-GATGACTCGCA-TTACTAGGAATT-CCTCGTTG 548 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATTACCCGGA 126 |||| ||| ||||||||||||||||||||||||| ||| | ||||||| |||||||| Sbjct 549 AAGATCAATAATTGCAATGATCTATCCCCATCACAATGGAGTTTCAAAAGATTACCCAAG 608 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 | | || ||| ||||| | ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 609 CATTTCAGCCCAGGTG-TGCACTTGTTGAATCCATTAGTGTAGCACGCGTGCGGCCCAGA 667 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 668 ACATCTAAGTGCATCACAGACATGTTATTGTCTCAAACTTCC 709 >seq95143 Length=4895 Score = 230 bits (254), Expect = 4e-58 Identities = 163/183 (89%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 47 TTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGA 106 |||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| Sbjct 4708 TTACTAGGAATT-CCTCCTTGAAGATCAATAATTGCAATGATCTATCCCCATCACGATGG 4766 Query 107 AATTTCAAA-GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT 165 | ||||||| |||||||| | | || ||||||||| | ||| ||||||| ||||||| Sbjct 4767 AGTTTCAAAAGATTACCCCAGCATTTCAGCCAAGGTG-TGCACTTGTTGAATCCATCAGT 4825 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4826 GTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTATTATTGCCTCAAACT 4885 Query 226 TCC 228 ||| Sbjct 4886 TCC 4888 >seq37609 Length=606 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 492 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 435 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 434 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 375 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 374 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 315 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 314 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 262 >seq104604 Length=697 Score = 147 bits (162), Expect = 3e-33 Identities = 92/98 (94%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 || ||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 689 TCAGCCCAGGTG-TGCACTCGTTGAATCCATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 631 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||| Sbjct 630 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 593 >seq48559 Length=1174 Score = 147 bits (162), Expect = 3e-33 Identities = 120/142 (85%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 ||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||| Sbjct 1171 TGATGACTCGCATTTACTAGGAATT-CCTCGTTGAAGATCAATAATTGCAATGATCTATC 1113 Query 94 CCCATCACGATGAAATTTC-AAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT 152 | |||||||||| | |||| ||||||||||| | | || ||| ||||| | ||| || Sbjct 1112 CTCATCACGATGGAGTTTCAAAAGATTACCCAAGCATTTCAGCCCAGGTG-TGCACTTGT 1054 Query 153 TGAATACATCAGTGTAGCGCGC 174 ||||| |||||||||||| ||| Sbjct 1053 TGAATTCATCAGTGTAGCACGC 1032 >seq37160 Length=216 Score = 143 bits (158), Expect = 4e-32 Identities = 102/116 (88%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 113 AAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 ||||||||||| | | || ||| ||||| | ||||||||||| ||||||||||||| Sbjct 213 AAAGATTACCCAAGCATTTCAGCCCAGGTG-TGCACTCGTTGAATCCATCAGTGTAGCGT 155 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 GTGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 99 >seq82439 Length=4510 Score = 125 bits (138), Expect = 1e-26 Identities = 125/158 (79%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||| ||||||||||||| |||| ||||| || ||| ||| |||| | Sbjct 2494 GTACAAAGGGTAGGGATGTAGTCAACGCGA-CTTGGTGACTTGCATTTAATAGAAATT-C 2437 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC-AAAGATT 119 ||| ||||| | ||| |||||||||||||||||||||||| |||| | |||| ||| ||| Sbjct 2436 CTCATTGAACATCAATAATTGCAATGATCTATCCCCATCATGATGGAGTTTCAAAATATT 2377 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAAT 157 | | ||| |||||| | | | |||| |||||| Sbjct 2376 ATGCAAGCCTTTCGGCCCAAGAACAACACTCATTGAAT 2339 >seq39035 Length=321 Score = 122 bits (134), Expect = 1e-25 Identities = 77/82 (94%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 ACTCGTTGAATCCATTAGTGTAGCGCGCGTGCGGCCTAGAACATCTAAGGGCATCACAG- 66 Query 207 CCTGTTATTGCCTCAAACTTCC 228 | |||||||||||||||||||| Sbjct 65 CTTGTTATTGCCTCAAACTTCC 44 >seq60538 Length=1678 Score = 93.3 bits (102), Expect = 6e-17 Identities = 66/73 (90%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 24 AACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCA 83 ||||| |||| |||||||||| |||||||||||| |||||||||||| ||| ||||||| Sbjct 1034 AACGCAAGCT-GATGACTCGCATTTACTAGGAATT-CCTCGTTGAAGATCAATAATTGCA 1091 Query 84 ATGATCTATCCCC 96 ||||||||||||| Sbjct 1092 ATGATCTATCCCC 1104 >seq86124 Length=596 Score = 86.0 bits (94), Expect = 9e-15 Identities = 73/87 (84%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||||||||||| |||||| ||||| || |||||||||| |||| Sbjct 362 TACAAAGGGCAGGGACGTAGTCAATGCGAGC----TGACTTGCATTTACTAGGAA-TTCC 308 Query 62 TCGTTGAAGACCAACAATTGCA-ATGA 87 | |||||||| ||| |||| || |||| Sbjct 307 TTGTTGAAGATCAATAATTACATATGA 281 >seq50497 Length=1531 Score = 86.0 bits (94), Expect = 9e-15 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC-AAAGATTA 120 |||||||||| ||| ||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 1531 TCGTTGAAGATCAATAATTGCAATGATCTATCCCCATCACGATGGAGTTTCAAAAGATTA 1472 Query 121 CC 122 || Sbjct 1471 CC 1470 >seq23463 Length=255 Score = 86.0 bits (94), Expect = 9e-15 Identities = 59/64 (92%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||| Sbjct 255 ACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAA-TTCCTCGTTGAAGATCAA 198 Query 76 CAAT 79 ||| Sbjct 197 TAAT 194 >seq4654 Length=211 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct 66 GCGCGTGCTGCCCAAAACATATAAGGGCATCACAGACCTGTCATTGCCTCAAAATT 11 >seq27689 Length=257 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 || ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct 66 GCACGTGCTGCCCAAAACATATAAGGGCATCACAGACCTGTCATTGCCTCAAAATT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751228416510