Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq67996 109 3e-22 seq34658 104 1e-20 seq50823 98.7 6e-19 seq4444 87.8 1e-15 seq35006 84.2 1e-14 seq9284 84.2 1e-14 seq14984 82.4 4e-14 seq103112 73.4 2e-11 >seq67996 Length=899 Score = 109 bits (120), Expect = 3e-22 Identities = 97/120 (81%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 |||||||||||||| |||||||| | |||||| | |||||| || ||| |||| Sbjct 691 GAACCCAAAGACTTAGATTTCTCATGAGGTGCTGGCGGAGTCATCCAAGTGA---CATCC 635 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| |||| |||| |||||| |||||||| ||||||||||||| Sbjct 634 ACCAATCCCTAGTCGGCATCGTTTCTGGTTGAGACTAGGACGGTATTTGATCGTCTTCGA 575 >seq34658 Length=356 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||| |||||||| | ||||| | || ||| ||||||| || Sbjct 141 GAACCCAAAGACTTAGATTTCTCATGAGGTGTTGGCGGAATCATCCAAGTAACATCCGCC 200 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||| ||| |||||||||||||||||| Sbjct 201 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTGGGACAGTATCTGATCGTCTTCGA 257 >seq50823 Length=1194 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 1110 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 1051 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 1050 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 994 >seq4444 Length=226 Score = 87.8 bits (96), Expect = 1e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 ||||||| || ||||||||||||||| ||||| |||| |||||| ||| |||||||||| Sbjct 15 TAACATCCGCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACAGTATCTGATC 74 Query 110 GTCTTCGA 117 |||||||| Sbjct 75 GTCTTCGA 82 >seq35006 Length=441 Score = 84.2 bits (92), Expect = 1e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 ||||||| || ||||||| ||||||| ||||| |||| |||||| |||||||||||||| Sbjct 237 TAACATCCGCCAATCCCTACTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATC 296 Query 110 GTCTTC 115 |||||| Sbjct 297 GTCTTC 302 >seq9284 Length=288 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 230 CCAATCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 288 >seq14984 Length=270 Score = 82.4 bits (90), Expect = 4e-14 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1 TCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 55 >seq103112 Length=2851 Score = 73.4 bits (80), Expect = 2e-11 Identities = 85/114 (75%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||| ||||||| |||||||| |||||| | || || |||| ||| || Sbjct 1036 GAACCCGAAGACTTGGATTTCTCACGAGGTGCTGGCAGAATCGTTCAAATAATATCCTCC 1095 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 ||| ||||||||||| ||||| |||| |||||| |||||| ||||| |||| Sbjct 1096 AATCTCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGT---TGATCATCTT 1146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278123564460