Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq50823 174 3e-41 seq4444 141 2e-31 seq65173 122 2e-25 seq34658 118 2e-24 seq10222 95.1 2e-17 seq80962 82.4 1e-13 seq67996 73.4 7e-11 >seq50823 Length=1194 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 711 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 770 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 771 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 829 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 830 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 889 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 890 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 949 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 950 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 986 >seq4444 Length=226 Score = 141 bits (156), Expect = 2e-31 Identities = 120/144 (83%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 175 GGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 |||||| ||||||| ||||||||| ||| ||||| || |||| | ||||||||||||| Sbjct 225 GGACCGGAGTAATGACTAATAGGGACAGTTGGGGGCATCCGTATACCATTGTCAGAGGTG 166 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 || || |||||||||| | || | ||||| ||||||||| || ||||||||||||||| Sbjct 165 AATTT-TTGGATTTATGGTAGGCGAACTATTGCGAAAGCATTTGTCAAGGATGTTTTCAT 107 Query 295 TAATCAGTGAACGAAAGTT-AGGG 317 |||||| ||||||||||| |||| Sbjct 106 TAATCA-AGAACGAAAGTTGAGGG 84 >seq65173 Length=1226 Score = 122 bits (134), Expect = 2e-25 Identities = 104/126 (83%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||||||| |||||||||||||| |||||||| | || ||||| ||||||||||||||||| Sbjct 981 TTACTTTCAAAAAATTAGAGTGCTCAAAGCAAGTCTATGCTCTGAATACATTAGCATGGA 1040 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| ||||||| | ||| || || ||||||| | | |||||| ||||||| ||| Sbjct 1041 ATAACGCTATAGGAC-TATGGTCCTGTTGTGTTGGTCTATGGGACCGGAGTAATGACTAA 1099 Query 194 TAGGGA 199 |||||| Sbjct 1100 TAGGGA 1105 >seq34658 Length=356 Score = 118 bits (130), Expect = 2e-24 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 ||||||||||||||||||||||||||||| | ||| ||||||||||||||| || ||| Sbjct 354 ATTGTCAGAGGTGAAATTCTTGGATTTATGGTAGATGAACTACTGCGAAAGCATTTGCCA 295 Query 282 AGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||||||||||||||||| ||||||||||| Sbjct 294 ATGATGTTTTCATTAATCA-AGAACGAAAGTT 264 >seq10222 Length=221 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/99 (82%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 || |||||||||| || | || | || | | | || |||||||||||||||||| || Sbjct 120 TGGCCTTCACTGGCTGGGGCGTGAAGTCGGCGATGTTTTTTTGAAAAAATTAGAGTGCTC 179 Query 100 AAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAA 137 |||||| |||| ||||| ||||||||||||||||||||| Sbjct 180 AAAGCAAGCCTATGCTCTGAATACATTAGCATGGAATAA 218 >seq80962 Length=1033 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGA-AGACTAACTACTGCGAAAGCGTTCACC 280 ||| |||||||||||||||||| |||| |||| |||| ||||||||| ||| | || || Sbjct 171 ATTATCAGAGGTGAAATTCTTGAATTT-TTGATAGACGAACTACTGCAAAATCATTTGCC 113 Query 281 AAGGATGTTTTCAT 294 |||||||||||||| Sbjct 112 AAGGATGTTTTCAT 99 >seq67996 Length=899 Score = 73.4 bits (80), Expect = 7e-11 Identities = 53/60 (88%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||| || |||||||||||||||||||||| |||||||||| |||| Sbjct 515 AACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AAAACGAAAGTTGGGGG 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914230675072