Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq23818 107 6e-21 >seq23818 Length=1374 Score = 107 bits (118), Expect = 6e-21 Identities = 163/230 (71%), Gaps = 18/230 (8%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||| ||||||||||||| |||||||| ||||| |||||| Sbjct 348 TACGCTCGCAAGAGTCAAACTCAACGGAATTGACGGGGGCCCGCACAGGCGGTTGAGCAT 407 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||| ||| |||| || | ||||| |||| || || | || | | ||| Sbjct 408 GTGGTTTAATGTGAAACAACACGCACAACCTCACCATCCCTGGAAAGCCCC---CGCCT- 463 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGG--ACAG-AGTGACAGGTGATGCATGGTTGTCGT 177 || ||| || | ||| ||| || | |||| ||||||| | |||| Sbjct 464 ----------GGGTTCACCAGGGTGGGTAGCAGCCGTCCCGGGTGCTGCATGGCTATCGT 513 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC-CGCAACGAGCGCAACCC 226 | || ||||||||||||||| |||| | ||| ||||| || | |||| Sbjct 514 CTGCCCGTGTCGTGAGATGTGCGGTTCATTCCATGCAACAAGTGTCACCC 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502407053440