Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq73850 248 1e-63 seq37609 244 2e-62 seq37160 192 9e-47 seq82439 183 5e-44 seq73225 167 4e-39 seq39035 150 3e-34 seq104604 134 2e-29 seq95143 120 5e-25 seq80343 116 6e-24 seq96306 98.7 2e-18 seq4654 80.6 4e-13 seq27689 75.2 2e-11 >seq73850 Length=1700 Score = 248 bits (274), Expect = 1e-63 Identities = 211/259 (81%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | |||||||| |||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 638 TCCATTAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGTGCATCACAGACATGTTATTG 697 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAAT----AGTCCCTC------TAAGAAGCCAGCC 121 |||||||||||||| ||| || | || || || |||||||| |||| Sbjct 698 TCTCAAACTTCCATTTGCTAGATGAGAAGCTAGAGGAGCTAGATAGATAAGAAGCTAGCC 757 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || | | || || | |||| |||||||| | |||||| ||| |||| ||||| Sbjct 758 ACAAAGAAGAATCTTTGTGTAGCTAGTTAGCAGGCTGAGGTCTTGTTTGTTAATAGAATT 817 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 818 AACCAGACAAATCACTCCACCAACTAAGAACGACCATGCACTACCACCCATAGAATCAAG 877 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 878 AAAGAGCTCTCAATCTGTC 896 >seq37609 Length=606 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 334 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 276 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 275 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 217 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 216 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 157 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 156 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 97 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 96 ATCAATCTGTC 86 >seq37160 Length=216 Score = 192 bits (212), Expect = 9e-47 Identities = 151/180 (84%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||| | |||||||||| ||||||||||||||||||||| Sbjct 180 ACTCGTTGAATCCATCAGTGTAGCGTGTGTGCGGCCCAAAACATCTAAGGGCATCACAGA 121 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || || || ||||||||||||||||||| |||| Sbjct 120 CCTGTTATTGCCTCAAACTTCCATCTACTAGATGCAAATAGTCCCTCTAAGAAGCTAGCC 61 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || | | || || | |||| |||| ||| | ||||||||||||||| ||||||| Sbjct 60 ACAAAGAAGAATCTTTGTGTAGCTAGTTAGTAGGCTGAGGTCTCGTTCGTTAACGGAATT 1 >seq82439 Length=4510 Score = 183 bits (202), Expect = 5e-44 Identities = 136/158 (86%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGG 159 ||||||||||||||| ||||| ||| | | || || | |||| |||||||||| ||| Sbjct 750 GTCCCTCTAAGAAGCTGGCCACAAACAAGAATCTTTGCGTAGCTAGTTAGCAGGTTGAGG 691 Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 | ||||| |||| | |||||||| ||||||||||||||||||| |||||| | ||||||| Sbjct 690 TTTCGTTTGTTAACAGAATTAACTAGACAAATCACTCCACCAATTAAGAATGACCATGCA 631 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||||||||| ||| Sbjct 630 CCACCACCCATAGAATCAAGAAAGAGCTATCAATATGT 593 >seq73225 Length=459 Score = 167 bits (184), Expect = 4e-39 Identities = 143/176 (81%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 176 ACTCGTTGAATCCATCAGTGTAGCGTTCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 117 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| | |||||||||| || || || |||||||||||||| | || ||| Sbjct 116 CCTGTTATTGCTTTAAACTTCCATATTCTAGACGCAAATAGTCCCTCTAAAATGCTGGCC 57 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || || | | || || | |||| |||| ||| | ||||||||||||||| ||| Sbjct 56 ACAAAGAAGAATCTTTGTGTAGCTAGTTAGTAGGCTGAGGTCTCGTTCGTTAACGG 1 >seq39035 Length=321 Score = 150 bits (166), Expect = 3e-34 Identities = 109/125 (87%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| | |||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 ACTCGTTGAATCCATTAGTGTAGCGCGCGTGCGGCCTAGAACATCTAAGGGCATCACAG- 66 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||||||| ||| || || ||||||||||||||||||| ||| Sbjct 65 CTTGTTATTGCCTCAAACTTCCATCTGCTAGACGCAAATAGTCCCTCTAAGAAGCTGGCC 6 Query 122 ACCAA 126 || || Sbjct 5 ACAAA 1 >seq104604 Length=697 Score = 134 bits (148), Expect = 2e-29 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 ACTCGTTGAATCCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 615 Query 62 CCTGTTATTGCCTCAAACTTCCAT 85 |||||||||||||||||||||||| Sbjct 614 CCTGTTATTGCCTCAAACTTCCAT 591 >seq95143 Length=4895 Score = 120 bits (132), Expect = 5e-25 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 4817 TCCATCAGTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTATTATTG 4876 Query 72 CCTCAAACTTCCAT 85 |||||||||||||| Sbjct 4877 CCTCAAACTTCCAT 4890 >seq80343 Length=317 Score = 116 bits (128), Expect = 6e-24 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 165 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA 106 Query 252 ATCTGTC 258 ||||||| Sbjct 105 ATCTGTC 99 >seq96306 Length=1258 Score = 98.7 bits (108), Expect = 2e-18 Identities = 54/54 (100%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 195 >seq4654 Length=211 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/68 (87%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||| | ||||||||| ||| ||||| ||||| |||||||||||||||||||| |||||| Sbjct 76 CGTTAATGTAGCGCG--TGCTGCCCAAAACATATAAGGGCATCACAGACCTGTCATTGCC 19 Query 74 TCAAACTT 81 ||||| || Sbjct 18 TCAAAATT 11 >seq27689 Length=257 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/68 (85%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||| | |||||| || ||| ||||| ||||| |||||||||||||||||||| |||||| Sbjct 76 CGTTAATGTAGCACG--TGCTGCCCAAAACATATAAGGGCATCACAGACCTGTCATTGCC 19 Query 74 TCAAACTT 81 ||||| || Sbjct 18 TCAAAATT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795982449834