Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq63041 336 4e-90 seq49728 264 2e-68 seq9262 257 3e-66 seq29442 212 1e-52 seq76348 176 8e-42 seq82397 170 3e-40 seq105683 161 2e-37 seq66374 150 3e-34 seq101963 136 7e-30 seq101962 136 7e-30 seq87594 131 3e-28 seq29390 114 2e-23 seq92270 93.3 7e-17 seq104886 73.4 7e-11 >seq63041 Length=432 Score = 336 bits (372), Expect = 4e-90 Identities = 249/291 (86%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| |||| ||| | ||| ||||||||||||||||||||||||| Sbjct 127 TACTAAGTTGAATTACTATTGTGGCACAAGGCATTAGTAGGGTAAAACTAACCTGTCTCA 186 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 187 TGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 246 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 247 ATTCTACTTCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCAAAGTCGCTAT 306 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||| | Sbjct 307 GAATGCTTGGCTGCCACAAGCCAATTATCCCTGTGG------TTCTGACACCTCTAGCTT 360 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 |||| | | |||||||||||||||||||| |||||| |||||||| Sbjct 361 CAAACCCCAAAATACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTAT 411 >seq49728 Length=523 Score = 264 bits (292), Expect = 2e-68 Identities = 182/206 (88%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| |||| ||| | | ||||||||||||||||||||| ||||||| Sbjct 206 TACTAAGTTGAATTACTATTGTGGCAAAAGGCATCAGTAGGGTAAAACTAACATGTCTCA 147 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | ||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || Sbjct 146 CGCCGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGATGAACAATCCAACACTTGGTGA 87 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 86 ATTCTGCTTCACAATGATAAAAGGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 27 Query 181 GAACGCTTGGCTGCCACAAGCCAGTT 206 |||| ||||||||||||||||||||| Sbjct 26 GAACTCTTGGCTGCCACAAGCCAGTT 1 >seq9262 Length=1301 Score = 257 bits (284), Expect = 3e-66 Identities = 232/294 (79%), Gaps = 11/294 (4%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| ||| | ||||| || ||||||| ||||||||||| Sbjct 351 TACTAAGTTGAATTATTATTGTGGCATAGAACATCAATAAGGTAAAATTAACCTGTCTCG 292 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||| |||||| || |||| |||||||||||||||||| || || Sbjct 291 CGACGGTTTAAACCTAG-----------TATTGGTGGGTGAACAATCCAACACTATGTGA 243 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 | | |||||| |||||||||||||| |||| |||| || |||||||||||| ||||| Sbjct 242 AGTTTGCTTCACAGTGATAGGAAGAGCCAACATTGAAGAATAAAAAAGCAACGTTGCTAT 183 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||||| | Sbjct 182 GAACGCTTGGCTACCATAAGCCAGTTATCCCTATAGTAACTTTTTTGACACCTCTAGCTT 123 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | |||||||||||| ||||||||| ||||||| |||||||| || Sbjct 122 CAAATCCTAAAGGACTAAAGGATTGATAGGCCATGCTTTCATAGTTTGTATCCA 69 >seq29442 Length=294 Score = 212 bits (234), Expect = 1e-52 Identities = 159/187 (85%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 294 CCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAA 235 Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 234 AGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 175 Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286 | |||||| || | ||| | || | |||||||| ||||| | |||||| ||| Sbjct 174 GACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC 115 Query 287 TGTATTC 293 ||||||| Sbjct 114 TGTATTC 108 >seq76348 Length=920 Score = 176 bits (194), Expect = 8e-42 Identities = 120/135 (89%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 920 AGGATCAAAAAGCAACGTCGCTATGAACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 861 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||| ||||||| |||||||||| ||||| ||| ||||||| |||||||||||| | Sbjct 860 TAATTTTTCTGACACCTCTAGCTTCAAACCCCGAAATACTAAAGTATCGATAGGCCATGC 801 Query 277 TTTCATGGTTTGTAT 291 ||||| |||||||| Sbjct 800 TTTCACAGTTTGTAT 786 >seq82397 Length=5520 Score = 170 bits (188), Expect = 3e-40 Identities = 111/122 (91%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 ||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||| Sbjct 1 CTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGC 60 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 61 CGATATCGAAGGATCAAAAAGCAACGTCGCTATGAACGTTTGGCTGCCACAAGCCAGTCA 120 Query 208 TC 209 || Sbjct 121 TC 122 >seq105683 Length=902 Score = 161 bits (178), Expect = 2e-37 Identities = 147/190 (77%), Gaps = 18/190 (9%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| |||| ||| | |||||||| | |||||||||||||||||| Sbjct 878 TACTAAGTTGAATTACTATTGTGGCACAAGGCATCAGTAAGATAAAACTAACCTGTCTCA 819 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||||| | ||||||||| ||| || Sbjct 818 CAATGGTCTAAACCCAGCTCACAT------------------CAATCCAACACTTGGTGA 777 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 776 ATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCAATGTCGCTAT 717 Query 181 GAACGCTTGG 190 ||| |||||| Sbjct 716 GAATGCTTGG 707 >seq66374 Length=464 Score = 150 bits (166), Expect = 3e-34 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 60 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| | ||||| | | |||||||||||||||||||| |||||| |||||||| Sbjct 61 CTAACTTCAAACCCCCAAATACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTAT 118 >seq101963 Length=3508 Score = 136 bits (150), Expect = 7e-30 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| ||||||| ||||||||||||| ||| |||||||||||||||| | ||||||||| Sbjct 1602 AAGAGTCGACATCTAAGGATCAAAAAGGAACATCGCTATGAACGCTTGACGGCCACAAGC 1661 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||| |||||||| |||| || |||||||||| ||||| Sbjct 1662 CAGTTATCCTTGTGGTAATTTTTATGACACCTCTAGCTTCAAA 1704 >seq101962 Length=13078 Score = 136 bits (150), Expect = 7e-30 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| ||||||| ||||||||||||| ||| |||||||||||||||| | ||||||||| Sbjct 1739 AAGAGTCGACATCTAAGGATCAAAAAGGAACATCGCTATGAACGCTTGACGGCCACAAGC 1680 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||| |||||||| |||| || |||||||||| ||||| Sbjct 1679 CAGTTATCCTTGTGGTAATTTTTATGACACCTCTAGCTTCAAA 1637 >seq87594 Length=2848 Score = 131 bits (144), Expect = 3e-28 Identities = 100/116 (86%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| |||||| |||| ||| ||| | |||| | ||||||||||||| | ||||| Sbjct 117 TACTAAGTTAAATTACTATTGTGGC-ACGAGGCATCTGAAGGGTAAAACTAAACCGTCTC 59 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 | |||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 58 ACAACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTT 3 >seq29390 Length=236 Score = 114 bits (126), Expect = 2e-23 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 142 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 201 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 | ||||||||||||||||||||||||||||||||| Sbjct 202 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 236 >seq92270 Length=2473 Score = 93.3 bits (102), Expect = 7e-17 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 2411 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA 2466 >seq104886 Length=2168 Score = 73.4 bits (80), Expect = 7e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||| |||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 782 TGAGAGGATGAGCCGACATCGAAGGATCGAAAAGCAACGTCGCTATGA 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853495070784