Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1402 84.2 5e-14 seq26078 78.8 2e-12 >seq1402 Length=928 Score = 84.2 bits (92), Expect = 5e-14 Identities = 78/97 (80%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTT--TCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98 || ||||||||| ||||| ||||||||| || ||| ||||||||||| | | |||| Sbjct 530 GCCGGATCAGGCGAGATCGCCTATTGTCCAAAATGCCCTACTGCTGCCTCAC-TCGGAGC 472 Query 99 CTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 | || |||||||||||| || |||| |||||||||| Sbjct 471 CCGGGCCGTGTCTCAGTCCCGGTGTCGCTGATCATCC 435 >seq26078 Length=670 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTT--TCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98 || ||||||||| ||||| ||||||||| || ||| ||||||||||| | | |||| Sbjct 121 GCCGGATCAGGCAAGATCGCCTATTGTCCAAAATCCCCTACTGCTGCCTCAC-TCGGAGC 179 Query 99 CTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 | || | |||||||||| || |||| |||||||||| Sbjct 180 CCGGGCTGTGTCTCAGTCCCGGTGTCGCTGATCATCC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070864601920