Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq50823 96.9 4e-18 seq65173 93.3 4e-17 seq10222 78.8 1e-12 >seq50823 Length=1194 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 747 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 806 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 807 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 864 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 865 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 920 >seq65173 Length=1226 Score = 93.3 bits (102), Expect = 4e-17 Identities = 99/127 (78%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||| |||||||||||| | |||||||| | || ||||| |||||||||| |||||| Sbjct 981 TTACTTTCAAAAAATTAGAGTGCTCAAAGCAAGTCTATGCTCTGAATACATTAGCATGGA 1040 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | ||| || || ||| ||| | | |||||| ||||||| | Sbjct 1041 ATAACGCTATAGGAC-TATGGTCCTGTTGTGTTGGTCTATGGGACCG-GAGTAATGACTA 1098 Query 133 ATACGGA 139 ||| ||| Sbjct 1099 ATAGGGA 1105 >seq10222 Length=221 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 18 TTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAA 76 |||||||||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| Sbjct 159 TTTGAAAAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGAATACATTAGCATGGAATAA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511474666560