Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq47109 102 1e-19 >seq47109 Length=1816 Score = 102 bits (112), Expect = 1e-19 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159 ||||||| |||| | ||||| ||||| |||||||||||||| || || || || | Sbjct 1177 GGAAGGCCTCTT-GAGGAATGTCCACTGATCCCACTCGCTTCATTCGCTTCTTCCCCTCT 1235 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || ||||| || |||||||| || || || ||| ||| ||||||||||| || || ||| Sbjct 1236 TTCTGCTTGTCCAGCAGCTTCCGTTTTCGCGTTATGTCTCCGCCGTAGCACTTCGCGAGT 1295 Query 220 ACGTTCTT 227 |||||||| Sbjct 1296 ACGTTCTT 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 840736483158