Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1402 87.8 4e-15 seq26078 73.4 1e-10 >seq1402 Length=928 Score = 87.8 bits (96), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 7/162 (4%) Strand=Plus/Minus Query 24 CTTC-ATACACGCGGCATGG--CTGCATCAGGCTTG--CGCCCATTGTGCAATATTCCCC 78 |||| ||| |||| ||||| | | ||||||| | |||| ||||| ||| || ||| Sbjct 551 CTTCGATAGACGCATCATGGTGCCGGATCAGGCGAGATCGCCTATTGTCCAAAATGCCCT 492 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT-CCT 137 ||||||||||| | | |||| | || |||||||||||| || |||| |||| |||| || Sbjct 491 ACTGCTGCCTCAC-TCGGAGCCCGGGCCGTGTCTCAGTCCCGGTGTCGCTGATCATCCCA 433 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 | | | | |||| | ||| || || ||| |||| |||||| Sbjct 432 CAAATATCGGCTAAGCATCACCGGCTCGGTCGGCCTTTACCC 391 >seq26078 Length=670 Score = 73.4 bits (80), Expect = 1e-10 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTG--CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 104 ||||||| | |||| ||||| ||| || ||| ||||||||||| | | |||| | || Sbjct 126 ATCAGGCAAGATCGCCTATTGTCCAAAATCCCCTACTGCTGCCTCAC-TCGGAGCCCGGG 184 Query 105 CCGTGTCTCAGTTCCAGTGTGGCTGGTCAT-CCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | |||||||||| || |||| |||| |||| || | | | | |||| | ||| || || Sbjct 185 CTGTGTCTCAGTCCCGGTGTCGCTGATCATCCCACAAATATCGGCTAAGCATCACCGGCT 244 Query 164 AGGTGGGCCATTACCC 179 || |||| |||||| Sbjct 245 CAGTCGGCCTTTACCC 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221105307264