Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq73225 279 1e-72 seq73850 237 3e-60 seq95143 224 2e-56 seq37609 197 3e-48 seq37160 165 2e-38 seq39035 147 4e-33 seq104604 141 2e-31 seq48559 132 9e-29 seq82439 107 4e-21 seq60538 93.3 8e-17 seq50497 86.0 1e-14 seq23463 86.0 1e-14 seq86124 80.6 5e-13 seq4654 80.6 5e-13 seq27689 75.2 2e-11 seq84338 73.4 7e-11 >seq73225 Length=459 Score = 279 bits (308), Expect = 1e-72 Identities = 223/266 (84%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACA 122 || ||| || | ||||||||||||| || || || |||||||||| | ||||||||| Sbjct 55 GTGGCCAGCATTTTAGAGGGACTATTTGCGTCTAGAATATGGAAGTTTAAAGCAATAACA 114 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 115 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGAACGCTACACTGATGGATTCAACGA 174 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || || ||| | ||| | || | ||||||||||| | |||||| ||||| ||||||| Sbjct 175 GTGCA-CACATGGGCTGAAATGCTTGGGTAATCTTTTGAAACTCCATCGTGACGGGGATA 233 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||||||||| ||||||||||||||| |||||||| ||| || |||||| || Sbjct 234 GATCATTGCAATTATTGATCTTCAACGAGGAATTCCTAGTAAATGCGAGTTATCAGCTCG 293 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||||||||| Sbjct 294 CGTTGACTACGTCCCTGCCCTTTGTA 319 >seq73850 Length=1700 Score = 237 bits (262), Expect = 3e-60 Identities = 192/230 (83%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 || ||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 719 TCTAGCAAATGGAAGTTTGAGACAATAACATGTCTGTGATGCACTTAGATGTTCTGGGCC 660 Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||||| |||||||| | || |||| ||| || ||||| ||| | || | |||||| Sbjct 659 GCACGCGTGCTACACTAATGGATTCAACAAGTGCA-CACCTGGGCTGAAATGCTTGGGTA 601 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||| | |||||| | ||| |||||||||| |||||||||||||| |||||||||||| Sbjct 600 ATCTTTTGAAACTCCATTGTGATGGGGATAGATCATTGCAATTATTGATCTTCAACGAGG 541 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||| |||||||| ||| |||||||| | |||||| ||| ||||||||| Sbjct 540 AATTCCTAGTAA-TGCGAGTCATCAGATCTCGTTGACTACCTCCCTGCCC 492 >seq95143 Length=4895 Score = 224 bits (248), Expect = 2e-56 Identities = 164/189 (87%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 96 AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCA 155 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4895 AGCAGATGGAAGTTTGAGGCAATAATAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCA 4836 Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 ||| ||||||||||| || |||| ||| || ||||||||| | || | |||||||| Sbjct 4835 CGCACGCTACACTGATGGATTCAACAAGTGCA-CACCTTGGCTGAAATGCTGGGGTAATC 4777 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 || | |||||| ||||| |||||||||| |||||||||||||| ||||||| ||||||| Sbjct 4776 TTTTGAAACTCCATCGTGATGGGGATAGATCATTGCAATTATTGATCTTCAAGGAGGAAT 4717 Query 276 GCCTAGTAA 284 |||||||| Sbjct 4716 TCCTAGTAA 4708 >seq37609 Length=606 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 236 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 293 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 294 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 353 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 354 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 413 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 414 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 473 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 474 AAGTCCCTGCCCTTTGTA 491 >seq37160 Length=216 Score = 165 bits (182), Expect = 2e-38 Identities = 127/148 (86%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| || || || |||||||||||||||||||||||||||||| Sbjct 66 GCTTCTTAGAGGGACTATTTGCATCTAGTAGATGGAAGTTTGAGGCAATAACAGGTCTGT 125 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||| |||||||||| | ||||||||||| || |||||||| || | Sbjct 126 GATGCCCTTAGATGTTTTGGGCCGCACACACGCTACACTGATGGATTCAACGAGTGCA-C 184 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||| ||| | || | ||||||||||| Sbjct 185 ACCTGGGCTGAAATGCTTGGGTAATCTT 212 >seq39035 Length=321 Score = 147 bits (162), Expect = 4e-33 Identities = 116/135 (86%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACA 122 || ||| |||||||||||||||||| || || ||| ||||||||||||||||||||||| Sbjct 4 GTGGCCAGCTTCTTAGAGGGACTATTTGCGTCTAGCAGATGGAAGTTTGAGGCAATAACA 63 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 | |||||||||||||||||||||| |||||||||||||||||||| | || |||||| Sbjct 64 AG-CTGTGATGCCCTTAGATGTTCTAGGCCGCACGCGCGCTACACTAATGGATTCAACGA 122 Query 183 GTTCATCACCTTGGC 197 || || ||| | ||| Sbjct 123 GTGCA-CACATGGGC 136 >seq104604 Length=697 Score = 141 bits (156), Expect = 2e-31 Identities = 91/98 (93%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 649 Query 160 CGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||| || |||||||| || ||||| ||| Sbjct 650 CGCTACACTGATGGATTCAACGAGTGCA-CACCTGGGC 686 >seq48559 Length=1174 Score = 132 bits (146), Expect = 9e-29 Identities = 116/143 (81%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 157 GCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216 ||| |||||||||| | |||| ||| || ||||| ||| | || | |||||||||| Sbjct 1032 GCGTGCTACACTGATGAATTCAACAAGTGCA-CACCTGGGCTGAAATGCTTGGGTAATCT 1090 Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATG 276 | | |||||| ||||| || ||||||| |||||||||||||| ||||||||||||||| Sbjct 1091 TTTGAAACTCCATCGTGATGAGGATAGATCATTGCAATTATTGATCTTCAACGAGGAATT 1150 Query 277 CCTAGTAAGCGCGTGTCATCAGC 299 |||||||| ||| ||||||||| Sbjct 1151 CCTAGTAAATGCGAGTCATCAGC 1173 >seq82439 Length=4510 Score = 107 bits (118), Expect = 4e-21 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| |||| || |||| || | |||||| || || |||||||||| ||||||||| Sbjct 2360 GGCCGAAAGGCTTGCATAATATTTTGAAACTCCATCATGATGGGGATAGATCATTGCAAT 2419 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 ||||| | ||||| ||||||| ||| ||| || |||| || |||||||| ||| | Sbjct 2420 TATTGATGTTCAATGAGGAATTTCTATTAAATGCAAGTCACCAAGTCGCGTTGACTACAT 2479 Query 315 CCCTGCCCTTTGTA 328 |||| ||||||||| Sbjct 2480 CCCTACCCTTTGTA 2493 >seq60538 Length=1678 Score = 93.3 bits (102), Expect = 8e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 ||||||||| |||||||||||||| ||||||||||||||| |||||||| ||| ||||| Sbjct 1104 GGGGATAGATCATTGCAATTATTGATCTTCAACGAGGAATTCCTAGTAAATGCGAGTCAT 1045 Query 296 CAGCACGCGTT 306 |||| ||||| Sbjct 1044 CAGCTTGCGTT 1034 >seq50497 Length=1531 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||| ||| | || | | ||||||||| | |||||| ||||| |||||||||| ||| Sbjct 1450 CACCTGGGCTGAAATGCTTTGGTAATCTTTTGAAACTCCATCGTGATGGGGATAGATCAT 1509 Query 249 TGCAATTATTGCTCTTCAACGA 270 ||||||||||| |||||||||| Sbjct 1510 TGCAATTATTGATCTTCAACGA 1531 >seq23463 Length=255 Score = 86.0 bits (94), Expect = 1e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||||||| ||||||||||||||| ||||||||||| | ||||||||| |||||||| ||| Sbjct 194 ATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGACTAC 253 Query 313 GT 314 || Sbjct 254 GT 255 >seq86124 Length=596 Score = 80.6 bits (88), Expect = 5e-13 Identities = 66/80 (83%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||||||| |||||||| |||||| |||||||| || |||| || ||| |||| Sbjct 286 TGTAATTATTGATCTTCAACAAGGAATTCCTAGTAAATGCAAGTCA---GCTCGCATTGA 342 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 343 CTACGTCCCTGCCCTTTGTA 362 >seq4654 Length=211 Score = 80.6 bits (88), Expect = 5e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 96 AGCCGATGG-AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||| |||| || ||||||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 1 AGCGGATGTTAATTTTGAGGCAATGACAGGTCTGTGATGCCCTTATATGTTTTGGGCAGC 60 Query 155 ACGCGC 160 |||||| Sbjct 61 ACGCGC 66 >seq27689 Length=257 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 96 AGCCGATGG-AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||| |||| || ||||||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 1 AGCGGATGTTAATTTTGAGGCAATGACAGGTCTGTGATGCCCTTATATGTTTTGGGCAGC 60 Query 155 ACGCGC 160 ||| || Sbjct 61 ACGTGC 66 >seq84338 Length=785 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 96 AGCCGATGG-AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||| |||| || ||||||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 206 AGCGGATGTTAATTTTGAGGCAATGACAGGTCTGTGATGCCCTTATATGTTTTGGGCAGC 147 Query 155 AC 156 || Sbjct 146 AC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946196782592