Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq87594 114 2e-23 seq40503 111 3e-22 seq89958 107 3e-21 seq29390 104 4e-20 seq49728 86.0 1e-14 seq68725 82.4 1e-13 seq4155 78.8 2e-12 seq62626 73.4 6e-11 >seq87594 Length=2848 Score = 114 bits (126), Expect = 2e-23 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||||| ||||| || ||| || |||| Sbjct 115 GTACGAGAGGAACCGTTGA-TTCACA-TAATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 172 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| | |||||||| |||||||| ||||||||||||||||||| | Sbjct 173 GGCGCGAAGCTACCATGCGTAGGATTATGACTGAACGCTTCTAAGTCAGAATCCATGCTA 232 Query 121 GA 122 || Sbjct 233 GA 234 >seq40503 Length=681 Score = 111 bits (122), Expect = 3e-22 Identities = 109/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | ||||||||| ||||| || ||| || |||| Sbjct 681 GTACGAGAGGAACCGTTGATTT--GCATAATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 624 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||||| |||||||| |||||||||||||| ||||||||||||| | Sbjct 623 GGCGCAAAGCTACCATGCATAGGATTATGACTGAACGCCTCTAAATCAGAATCCATGCTA 564 Query 121 GAACGGGGTGATTCTCT 137 | ||| |||| |||||| Sbjct 563 G-ACGTGGTG-TTCTCT 549 >seq89958 Length=298 Score = 107 bits (118), Expect = 3e-21 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| | ||||||||| ||||| || ||| || |||| Sbjct 51 GTACGAGAGGAACAGTTGA-TTC-GCATAATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||||| | |||||||| ||||| |||||||||||||||||||||| | Sbjct 109 GACGTGAAGCTACCATGCGTAGGATTATGACTGAATGCCTCTAAGTCAGAATCCATGCTA 168 Query 121 GAACGGGGTG 130 | ||| |||| Sbjct 169 G-ACGTGGTG 177 >seq29390 Length=236 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 144 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 87 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 86 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 33 >seq49728 Length=523 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| |||||||| ||||| || ||| |||| Sbjct 204 GTACGAGAGGAACCGTTGA-TTCACG-TAATTGGTCATTGCGCTTGGTTGAAAGACCAGT 261 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||||| | |||||||| |||| ||||| |||||||||||||||| | Sbjct 262 GGCGCAAAGCTACCATGCGTAGGATTATGATTGAAAGCCTCCAAGTCAGAATCCATGCTA 321 Query 121 G 121 | Sbjct 322 G 322 >seq68725 Length=297 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 38 TTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACG 97 ||||| || ||| || ||||| || ||||||||||| | |||||||| |||||| Sbjct 293 TTGCGCTTGGTTGAAAAGCCAGTGGCGTGAAGCTACCATGCGTAGGATTATGACTGAACA 234 Query 98 CCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTC 138 ||||||||||||||||||||| ||| |||| | ||||| Sbjct 233 CCTCTAAGTCAGAATCCATGCTAGA----GGTGGTGCTCTC 197 >seq4155 Length=230 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || |||| | |||||||| || || || ||| || |||| Sbjct 161 TACGAGAGGAACCGTTGA-TTCACA-TAATTGGTCATTACGCTTGGTTGAAAAGCTAGTG 104 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTA 103 |||||||||||||| | |||||||| ||||||||||||| Sbjct 103 GCGCGAAGCTACCATGCGTAGGATTATGACTGAACGCCTCTA 62 >seq62626 Length=463 Score = 73.4 bits (80), Expect = 6e-11 Identities = 65/79 (82%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 59 GTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| | |||||||||||| | |||||||| || ||| ||||||||||| ||||||||| Sbjct 262 GTGACACGAAGCTACCATGCGTAGGATTATGACTAAACACCTCTAAGTCAAAATCCATGC 321 Query 119 CAGAACGGGGTGATTCTCT 137 || ||| |||| |||||| Sbjct 322 TAG-ACGTGGTG-TTCTCT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818359466496