Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq50823 322 1e-85 seq74694 194 5e-47 seq103470 158 4e-36 seq94446 138 3e-30 seq69605 132 1e-28 seq6598 118 3e-24 seq14880 116 1e-23 seq11706 104 7e-20 seq98386 98.7 3e-18 seq85922 96.9 1e-17 seq93291 93.3 1e-16 seq69483 93.3 1e-16 seq69482 93.3 1e-16 seq103717 91.5 4e-16 seq73102 91.5 4e-16 seq53967 86.0 2e-14 seq58603 84.2 7e-14 seq57729 80.6 8e-13 seq105679 77.0 1e-11 seq76254 77.0 1e-11 seq37683 77.0 1e-11 seq43465 75.2 3e-11 >seq50823 Length=1194 Score = 322 bits (356), Expect = 1e-85 Identities = 382/517 (74%), Gaps = 58/517 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 514 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 455 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 395 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 394 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 335 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 334 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 275 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 274 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 215 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 214 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 156 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 155 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 98 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 97 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 38 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||| | | |||||||||||| Sbjct 37 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATG 1 >seq74694 Length=289 Score = 194 bits (214), Expect = 5e-47 Identities = 191/242 (79%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 || ||||||||||||| | ||||||||| |||||||||||||| ||||||||||||| Sbjct 46 AAACGAACCCTAATTCTCTGTTACCCGTCACTACCATGGTAGGCCTCTATCCTACCATC- 104 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 |||||||||||||||||||||||| ||| ||| ||| || |||||| |||||||||| Sbjct 105 AAAGTTGATAGGGCAGAAATTTGATTGATGCATTGCCAGCACAAGGCTATGCGATTCGAC 164 Query 260 AAGTTATTATGAATCAC-CAAGGAGCCCCGAAG--GGCGTTGGTTTTTTATCTAATAAAT 316 |||||| ||||||||| || | | ||| || | ||| || ||||||||| | Sbjct 165 AAGTTACCATGAATCACTGAAATAACAAGCAAGCTTGCATCGGTCTTGAATCTAATAAGT 224 Query 317 ACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375 |||||| |||||||| ||| ||| ||||||||||||||||||| || ||||| Sbjct 225 GTGTCCCTTCAAAAAGTCGGGATTTGGTGCACGTATTAGCTCTAGAATTACTACAGTTAT 284 Query 376 CC 377 || Sbjct 285 CC 286 >seq103470 Length=5858 Score = 158 bits (174), Expect = 4e-36 Identities = 112/127 (88%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 || ||||||||||||||| |||||||||| |||||||||||| ||||||||||| || | Sbjct 5732 TAGTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAAGGTACCATCAAATAAACTATTA 5791 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCAT 467 ||| ||||||||||||||||||||||||| ||| | | | | ||||||||| |||||||| Sbjct 5792 CTGGTTTAATGAGCCATTCGCAGTTTCACAGTACAAAGTAGTTTATACTTACACATGCAT 5851 Query 468 GGCTTAA 474 ||||||| Sbjct 5852 GGCTTAA 5858 >seq94446 Length=330 Score = 138 bits (152), Expect = 3e-30 Identities = 99/113 (88%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204 ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| Sbjct 65 AACGCTAATTCTCCGTTACCCGTCACTACCATGGTAGGCCTCTATCCTACCATC-AAAGT 123 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG 257 ||||||||||||||||||| ||| |||| || || |||||| |||||||||| Sbjct 124 TGATAGGGCAGAAATTTGATTGATGCATCACCAGCACAAGGCTATGCGATTCG 176 >seq69605 Length=310 Score = 132 bits (146), Expect = 1e-28 Identities = 95/108 (88%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 143 CGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAA 202 ||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||| Sbjct 107 CGAACCCTAATTCTCCGTTACCCGTCACTACCATGGTAGGCCTTTATCCTACCATC-AAA 49 Query 203 GTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 ||||||||||||||||||||| ||| ||||||| || |||||| ||| Sbjct 48 GTTGATAGGGCAGAAATTTGATTGATGCATCGCCAGCACAAGGCTATG 1 >seq6598 Length=2026 Score = 118 bits (130), Expect = 3e-24 Identities = 111/140 (79%), Gaps = 15/140 (11%) Strand=Plus/Minus Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 |||||||||||||| |||| |||||| || | |||||||||||||| || Sbjct 1537 TCGAACCCTAATTCTCCGTCACCCGT------CA-------CTACTATCCTACCATC-AA 1492 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTA 260 || ||||||||||||||||||| |||| ||||||| || | |||||||||| ||||| | Sbjct 1491 AGCTGATAGGGCAGAAATTTGATTGAAACATCGCCAGCACAAAGGCCATGCAATTCGACA 1432 Query 261 AGTTATTATGAATCACCAAG 280 ||||| |||||||||| || Sbjct 1431 AGTTACCATGAATCACCGAG 1412 >seq14880 Length=294 Score = 116 bits (128), Expect = 1e-23 Identities = 110/140 (79%), Gaps = 13/140 (9%) Strand=Plus/Minus Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA---GGCCACTATCCTACCA 196 || ||||||||||||| |||||| |||| |||||||||| |||| ||||||||||| Sbjct 249 AAACGAACCCTAATTCTCCGTTATCCGTCACTACCATGGTAGGCGGCCTCTATCCTACCA 190 Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256 || |||||||||||||||||||||||| ||| ||| ||| || || ||||| Sbjct 189 TC-AAAGTTGATAGGGCAGAAATTTGATTGATGCATTGCCAGCACA---------GATTC 140 Query 257 GTTAAGTTATTATGAATCAC 276 | |||||| ||||||||| Sbjct 139 GACAAGTTACCATGAATCAC 120 >seq11706 Length=230 Score = 104 bits (114), Expect = 7e-20 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 423 CATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 ||||||||||||||| ||| | | | | ||||||||| |||||||||||||||||||||| Sbjct 1 CATTCGCAGTTTCACAGTACAAAGTAGTTTATACTTACACATGCATGGCTTAATCTTTGA 60 Query 482 GACAAGCATATGACTACTG 500 || |||||||||||||||| Sbjct 61 GATAAGCATATGACTACTG 79 >seq98386 Length=3030 Score = 98.7 bits (108), Expect = 3e-18 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 426 TCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 |||||||||||| ||| | | | | ||||||||| |||||||||||||||| |||||||| Sbjct 1 TCGCAGTTTCACAGTACAAAGTAGTTTATACTTACACATGCATGGCTTAAT-TTTGAGAC 59 Query 485 AAGCATATGACTACTGGC 502 |||||||||||||||||| Sbjct 60 AAGCATATGACTACTGGC 77 >seq85922 Length=1143 Score = 96.9 bits (106), Expect = 1e-17 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 |||||||| |||| |||||||||||| |||||||||||||||||||| | ||| ||||| Sbjct 132 GGGATTGGTTAATATGCGCGCCTGCTACCTTCCTTGGATGTGGTAGCTATCTCTTAGGCT 73 Query 130 CCCTCTCCGGAAT 142 ||||| ||||||| Sbjct 72 CCCTCACCGGAAT 60 >seq93291 Length=4848 Score = 93.3 bits (102), Expect = 1e-16 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 CCTTCCTTGGATGTGGTAGCGATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 59 >seq69483 Length=331 Score = 93.3 bits (102), Expect = 1e-16 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 2 GTAGTAAGGTACTATCAAATAAACTATTACTGATTTAATGAGCCATTCGCAGTTTC 57 >seq69482 Length=384 Score = 93.3 bits (102), Expect = 1e-16 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 2 GTAGTAAGGTACTATCAAATAAACTATTACTGATTTAATGAGCCATTCGCAGTTTC 57 >seq103717 Length=1155 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1049 TTATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 1103 >seq73102 Length=1378 Score = 91.5 bits (100), Expect = 4e-16 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 98 CTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 CTTCCTTGGATGTGGTAGCGATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 58 >seq53967 Length=787 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 12 TTATACTTACACATGCATGGCTTAATCTTTGAGACAAACATATGACTACTGACAG 66 >seq58603 Length=787 Score = 84.2 bits (92), Expect = 7e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 12 TTATACTTACACATGCATGGCTTAATCTTTGAGACAAACATATGACTACTG 62 >seq57729 Length=309 Score = 80.6 bits (88), Expect = 8e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 || ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 60 AAGCGAACCCTAATTCTCCGTTACCCGTCACTACCATGGTAGGCCTCTATCCTACCATC 2 >seq105679 Length=5103 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||| |||||| || | |||||| ||| ||| ||| | |||| | | Sbjct 3370 GCATGTATTAGCTCTAAAATTACTACTGCTATCCAAGTACTAA-GTATCAGCAAAAACAT 3428 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || | | ||||||||||||||| ||| || ||| Sbjct 3429 TATTATTAATTTAATGAGCCATTTGCAATTACAC 3462 >seq76254 Length=425 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 143 CGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 ||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 371 CGAACCCTAATTCTCCGTTACCCGTCACTACCATGGTAGGCCTCTATCCTACCAT 425 >seq37683 Length=267 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 106 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 267 GATGTGGTAGCGATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 218 >seq43465 Length=1844 Score = 75.2 bits (82), Expect = 3e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 329 AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| || ||| || ||||||||||||||||||| |||||||||| ||||||||| Sbjct 1776 AAGTCAGGATTTGGTACACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAAGG 1835 Query 389 TACTATCAA 397 ||| ||||| Sbjct 1836 TACCATCAA 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508800274944