Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq758 127 3e-27 >seq758 Length=186484 Score = 127 bits (140), Expect = 3e-27 Identities = 173/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||| || ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3856 CCTCCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3798 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || |||||||| || | Sbjct 3797 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCTCTG---------- 3748 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||| |||||| |||||||||| ||||| Sbjct 3747 -------CGAGAAG--GCGCCCCTTCTCCCGAAGTTGCGGGGCTATTTTGCCGAGTTCCT 3697 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 3696 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCAG 3637 Query 246 GTA 248 ||| Sbjct 3636 GTA 3634 Score = 127 bits (140), Expect = 3e-27 Identities = 173/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||| || ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 52552 CCTCCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 52610 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || |||||||| || | Sbjct 52611 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCTCTG---------- 52660 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||| |||||| |||||||||| ||||| Sbjct 52661 -------CGAGAAG--GCGCCCCTTCTCCCGAAGTTGCGGGGCTATTTTGCCGAGTTCCT 52711 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 52712 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCAG 52771 Query 246 GTA 248 ||| Sbjct 52772 GTA 52774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694394900934