Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq758 271 2e-70 >seq758 Length=186484 Score = 271 bits (300), Expect = 2e-70 Identities = 312/422 (74%), Gaps = 27/422 (6%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||||||| ||||||| | Sbjct 4057 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTG 3998 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3997 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 3938 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || |||| | | Sbjct 3937 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCTAGCTTTCCTGTCA 3878 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||| ||||||| |||||||||||| ||| |||| | Sbjct 3877 TCAGGTCACCAACTTCCTTCACCTCCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 3818 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 3817 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCG 3758 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| | | || ||| | ||||| ||||||||||||||| Sbjct 3757 ACC-TCCTCTGC-----GAGAA-----------------GGCGCCCCTTCTCCCGAAGTT 3721 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 ||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 3720 GCGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 3661 Query 418 CC 419 || Sbjct 3660 CC 3659 Score = 259 bits (286), Expect = 1e-66 Identities = 310/422 (73%), Gaps = 28/422 (7%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||||||| ||||||| | Sbjct 52352 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTG 52411 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | Sbjct 52412 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG-ATTTCGCTACAT 52470 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || |||| | | Sbjct 52471 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCTAGCTTTCCTGTCA 52530 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||| ||||||| |||||||||||| ||| |||| | Sbjct 52531 TCAGGTCACCAACTTCCTTCACCTCCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 52590 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 52591 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCG 52650 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| | | || ||| | ||||| ||||||||||||||| Sbjct 52651 ACC-TCCTCTGC-----GAGAA-----------------GGCGCCCCTTCTCCCGAAGTT 52687 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 ||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 52688 GCGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 52747 Query 418 CC 419 || Sbjct 52748 CC 52749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260790443136