Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq758 212 2e-52 >seq758 Length=186484 Score = 212 bits (234), Expect = 2e-52 Identities = 301/405 (74%), Gaps = 15/405 (4%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | ||||||||| ||||||||||| |||||| |||| | | |||| ||| Sbjct 2753 TCCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACCTAGTT-TCATCCAAGCTT- 2697 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||||| || |||||| || | |||||| || ||| Sbjct 2696 CATCCTGGTCAT-GGATAGATCACCCGGGTT-CGGGTCCATAAGC-AGCGAC-AGTTGCC 2641 Query 140 C-TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAA 196 | | | |||||||||||| ||||||| |||| | || |||| | ||| | | Sbjct 2640 CCTGGGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTTCCTTAACCAG-GCCGCCGCC 2583 Query 197 AATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCAC 256 ||||||||| | | |||| | ||| ||| |||| |||| | | || | ||||||| Sbjct 2582 TATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGATATCCAATTATCCTCCCAC 2523 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||| | || |||||||||| | |||||||||||||| | |||||||||||| || Sbjct 2522 TGCTCGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCTGGTG-GGGGTTCTTTTCACC 2464 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT-GGAGGATG 375 ||||||||||||||||| ||| |||||||||| ||| ||||||||||||| |||| || Sbjct 2463 TTTCCCTCACGGTACTATTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTACGAGG-TG 2405 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||| || || | ||||| || | ||||||| Sbjct 2404 GTCCTCGCTGATTCGCACGGGATTCCACGTGCCCCATGCTACTCG 2360 Score = 212 bits (234), Expect = 2e-52 Identities = 301/405 (74%), Gaps = 15/405 (4%) Strand=Plus/Plus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | ||||||||| ||||||||||| |||||| |||| | | |||| ||| Sbjct 53655 TCCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACCTAGTT-TCATCCAAGCTT- 53711 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||||| || |||||| || | |||||| || ||| Sbjct 53712 CATCCTGGTCAT-GGATAGATCACCCGGGTT-CGGGTCCATAAGC-AGCGAC-AGTTGCC 53767 Query 140 C-TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAA 196 | | | |||||||||||| ||||||| |||| | || |||| | ||| | | Sbjct 53768 CCTGGGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTTCCTTAACCAG-GCCGCCGCC 53825 Query 197 AATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCAC 256 ||||||||| | | |||| | ||| ||| |||| |||| | | || | ||||||| Sbjct 53826 TATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGATATCCAATTATCCTCCCAC 53885 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||| | || |||||||||| | |||||||||||||| | |||||||||||| || Sbjct 53886 TGCTCGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCTGGTG-GGGGTTCTTTTCACC 53944 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT-GGAGGATG 375 ||||||||||||||||| ||| |||||||||| ||| ||||||||||||| |||| || Sbjct 53945 TTTCCCTCACGGTACTATTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTACGAGG-TG 54003 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||| || || | ||||| || | ||||||| Sbjct 54004 GTCCTCGCTGATTCGCACGGGATTCCACGTGCCCCATGCTACTCG 54048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241590588672