Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq758 188 2e-45 >seq758 Length=186484 Score = 188 bits (208), Expect = 2e-45 Identities = 298/419 (71%), Gaps = 30/419 (7%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 3391 CGACTACGCCTATCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3332 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 3331 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3272 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACT--GAC 175 ||||||| || ||| || | |||| || | | | ||||| | | || Sbjct 3271 ACATTCTCGCTTCCGCTTCGTCCGCACCTGC---TCGCGCTGGTGCTTCCTCCTTCCGAG 3215 Query 176 ACG-----ACGCTCCCCTACCCAA--------CCACACAGGTTGCCACAGCTTCGGCGGA 222 || ||||||||||||| | | ||| | ||||||||||||| || Sbjct 3214 GCGGCGGAACGCTCCCCTACCGATGTGTTTTTCGACA-----TCCCACAGCTTCGGCAGA 3160 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282 |||| | |||| | ||| ||||||| | | | ||||| |||||||||||||||||| Sbjct 3159 CCGCTTA-GTCCCGTT-CATCCTCGGCGCAGGAGCGCTTGATCAGTGAGCTATTACGCAC 3102 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCC 341 |||||||||| |||||||||| || ||||||| || ||||| ||| |||| || ||| Sbjct 3101 TCTTTCAAGGGTGGCTGCTTCTGGGCAAACCTCCCGGCTGTCTTTGCA-CTCCTACCTCC 3043 Query 342 TTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| |||||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 3042 TTTACCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 2984 Score = 188 bits (208), Expect = 2e-45 Identities = 298/419 (71%), Gaps = 30/419 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 53017 CGACTACGCCTATCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 53076 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 53077 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 53136 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACT--GAC 175 ||||||| || ||| || | |||| || | | | ||||| | | || Sbjct 53137 ACATTCTCGCTTCCGCTTCGTCCGCACCTGC---TCGCGCTGGTGCTTCCTCCTTCCGAG 53193 Query 176 ACG-----ACGCTCCCCTACCCAA--------CCACACAGGTTGCCACAGCTTCGGCGGA 222 || ||||||||||||| | | ||| | ||||||||||||| || Sbjct 53194 GCGGCGGAACGCTCCCCTACCGATGTGTTTTTCGACA-----TCCCACAGCTTCGGCAGA 53248 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282 |||| | |||| | ||| ||||||| | | | ||||| |||||||||||||||||| Sbjct 53249 CCGCTTA-GTCCCGTT-CATCCTCGGCGCAGGAGCGCTTGATCAGTGAGCTATTACGCAC 53306 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCC 341 |||||||||| |||||||||| || ||||||| || ||||| || ||||| || ||| Sbjct 53307 TCTTTCAAGGGTGGCTGCTTCTGGGCAAACCTCCCGGCTGTCTTTGC-ACTCCTACCTCC 53365 Query 342 TTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| |||||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 53366 TTTACCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 53424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177591073792