Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq758 282 1e-73 >seq758 Length=186484 Score = 282 bits (312), Expect = 1e-73 Identities = 311/410 (76%), Gaps = 22/410 (5%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| ||||| |||||||||| |||||||||| ||| | |||||||| |||||||| Sbjct 56812 TTTACGACCCGTGGGCCTTCTTCCCCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 56871 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| Sbjct 56872 GCGGAAAATTCCCCACTGCT-CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 56930 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||| | ||||||||| ||||||||||| |||| ||||||||||| ||| Sbjct 56931 GGCTGATCATCCTCCCGGACCAGCTACTGATCGTCGCCTCGGTGAGCCATTACCCCACCA 56990 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||| ||||||| | | | ||| | | | || | ||| ||| | || Sbjct 56991 ACTGGCTAATCAGACGCAAGCCCCTCC--TTGGG-------CGGATTTCCTCCT-TCTGC 57040 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | |||| ||||||| | |||||||||| ||| |||||| || |||| Sbjct 57041 TCCTCAGCC--TATGGGGTATTACCAGCCGTTTCCAGCCGTTGTCCCCCACCCAAGGGCA 57098 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | |||| | | || ||||||||||||||||| | | | || | | |||||| Sbjct 57099 GGTTCCTACGCGTTGCTCACCCGTCCGCCACTGG---GAACACCACTAGGATGCTTC--- 57152 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 57153 ---CCGTACGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCATCCTGAG 57199 Score = 105 bits (116), Expect = 2e-20 Identities = 119/159 (75%), Gaps = 9/159 (6%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||| ||||||| | |||||||||| ||| |||||| || ||||| |||| | | Sbjct 153156 TATGGGGTATTACCAGCCGTTTCCAGCCGTTGTCCCCCACCCAAGGGCAGGTTCCTACGC 153097 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 || ||||||||||||||||| | | | || | | ||||||| ||| ||| Sbjct 153096 GTTGCTCACCCGTCCGCCACTGGGAAC---ACCACTAGGATGCTTCC------CGTACGA 153046 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||| ||||||||||||||| ||||| Sbjct 153045 CTTGCATGTGTTAGGCATGCCGCCAGCGTTCATCCTGAG 153007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222390734208