Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq758 174 5e-41 >seq758 Length=186484 Score = 174 bits (192), Expect = 5e-41 Identities = 338/486 (70%), Gaps = 11/486 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||| ||||||||| || || |||| |||||| || Sbjct 4379 TCGACGGGTGGGTCTTGCAGTCGAGCTCCCTTCCGCCTTTGCACTTGAAGGCTGATTTCC 4320 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| | ||||||||||||| ||||||||||||| ||||||||| | || |||||| Sbjct 4319 GTCCAGCCCGAGGGAACCTTTGCGCGCCTCCGTTACCCTTTGGGAGGCCTAC-GCCCCAT 4261 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGG-GCC--AAGGTTAGA-TAT 176 ||||| | ||| | |||||||| || | || ||| || || ||| | | Sbjct 4260 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTGAGTGACGCCGCAAAGTGAGAATTT 4201 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCA-CAACCACTAGCGTGGCCGCATC 235 || | |||||||||||||| | | ||| | | || | | | || | | || Sbjct 4200 TGGCTCTCCT-AGAGTGGTATTTCACTGATGGCTCGAGCCCCCCCGAAAGAGGAC-CTTC 4143 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 | | || ||||||| || | || | || || |||||| || | | ||| ||| Sbjct 4142 CTCGCCTTCCACCTAAGCTGCGCAGGAAGAGCCCAAAGCCAATCTCAGGGAACAGTAAAG 4083 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| | ||| | | ||||||| || | | |||| Sbjct 4082 CTTCATAGGGTCTTTCTGTCCGGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTT 4023 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAAC 413 ||||| | || | ||||||| | || |||||||||| ||||||| ||||||||| Sbjct 4022 CACCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAAC 3964 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| || || Sbjct 3963 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGG 3904 Query 474 GGCTTC 479 |||||| Sbjct 3903 GGCTTC 3898 Score = 161 bits (178), Expect = 3e-37 Identities = 336/486 (69%), Gaps = 12/486 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||| ||||||||| || || |||| |||||| || Sbjct 52030 TCGACGGGTGGGTCTTGCAGTCGAGCTCCCTTCCGCCTTTGCACTTGAAGGCTGATTTCC 52089 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| | ||||||||||||| ||||||||||||| ||||||||| | || |||||| Sbjct 52090 GTCCAGCCCGAGGGAACCTTTGCGCGCCTCCGTTACCCTTTGGGAGGCCTAC-GCCCCAT 52148 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGG-GCC--AAGGTTAGA-TAT 176 ||||| | ||| | |||||||| || | || ||| || || ||| | | Sbjct 52149 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTGAGTGACGCCGCAAAGTGAGAATTT 52208 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCA-CAACCACTAGCGTGGCCGCATC 235 || | |||||||||||||| | | ||| | | || | | | || | | || Sbjct 52209 TGGCTCTCCT-AGAGTGGTATTTCACTGATGGCTCGAGCCCCCCCGAAAGAGGAC-CTTC 52266 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 | | || ||||||| || | || | || || |||||| || | | ||| ||| Sbjct 52267 CTCGCCTTCCACCTAAGCTGCGCAGGAAGAGCCCAAAGCCAATCTCAGGGAACAGTAAAG 52326 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| | ||| | | ||||||| || | | |||| Sbjct 52327 CTTCATAGGGTCTTTCTGTCCGGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTT 52386 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAAC 413 ||||| | || | ||||||| | || |||||||||| ||||||| ||||||||| Sbjct 52387 CACCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAAC 52445 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||| |||||||||| |||||| ||||||||||| |||||||| || || Sbjct 52446 TTACCCGACAAGG-ATTTCGCTACATTAGGACCGTTATAGTTACGGCCGCCGTTCACCGG 52504 Query 474 GGCTTC 479 |||||| Sbjct 52505 GGCTTC 52510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702387095808