Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq758 639 2e-178 >seq758 Length=186484 Score = 639 bits (708), Expect = 2e-178 Identities = 737/992 (74%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||| ||| | || ||| | || ||||| || | || |||||||| || ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || ||||| | ||||| | ||||| || || ||||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 || || || || || || || || || ||||| ||||||| || || ||||| ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042 || ||||||||||| || | ||| | ||| ||| || ||| | |||||||| |||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC 160102 |||||||| ||||| | || || ||||| || ||||| ||||| | | |||| | || Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 160103 TTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGT 160162 | ||||||||| | || | | ||| |||||||||||||||||||| | ||| Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGC 93468 Query 160163 CTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCT 160222 | |||||||| || |||||| |||||| ||||| || || || || || || | || Sbjct 93469 TTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCC 93528 Query 160223 GTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160282 || || | ||||||| | ||||| || |||||||| | ||||||| | || ||| Sbjct 93529 GTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATC 93588 Query 160283 TCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 160342 ||||| || || |||| |||| | || |||||||| |||||||| ||||||||||||||| Sbjct 93589 TCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCG 93648 Query 160343 TTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGA 160402 ||||||||| | ||||| ||||| |||||||| |||||||| ||| |||||||||||| Sbjct 93649 TTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGT 93708 Query 160403 TCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGT 160462 || |||| |||||||| || || | || || || || | ||| ||| ||| ||| Sbjct 93709 TCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGT 93768 Query 160463 TACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGT 160522 |||| ||| ||||| || || || || || ||||| || || || || || ||||||||| Sbjct 93769 TACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGT 93828 Query 160523 CGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCT 160582 || ||||||||||||||||| |||||| ||||| || || || ||||| ||| | ||| Sbjct 93829 CGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCT 93888 Query 160583 GCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAAT 160642 |||||||| || || || |||||||| || || | || | || ||||| ||||| Sbjct 93889 GCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAAC 93948 Query 160643 CTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACT 160702 || || ||||||||||| ||||| ||| | | || | ||| |||| || | ||||| Sbjct 93949 CTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACA 94008 Query 160703 TGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCT 160762 ||||| ||| | | |||||||| || || ||||| || ||||| || ||||||||| Sbjct 94009 TGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCT 94068 Query 160763 CACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 |||||||||||||| || || ||| | | ||| Sbjct 94069 CACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 298 bits (330), Expect = 6e-76 Identities = 668/996 (67%), Gaps = 14/996 (1%) Strand=Plus/Plus Query 161543 GAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 161602 |||| ||||| | || || || ||||||| || ||| |||| ||| ||| | Sbjct 33924 GAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCT 33983 Query 161603 CTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCG 161662 || ||||||||| | || || || |||| | || |||| || || ||| | | Sbjct 33984 CTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGG 34043 Query 161663 CTAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACG 161722 |||||||||||| |||||| || | |||||| | || | ||| || || || Sbjct 34044 CTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACA 34103 Query 161723 CTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | ||||| | | | || |||||||| ||||| ||||| |||||| | | | Sbjct 34104 GCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTT 34163 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || |||| | || || || |||| || || || ||||| || ||||| | | |||| | Sbjct 34164 GGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGG 34223 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGT---ATC-CGTCCTTACAAT 161898 | ||| | || || | ||||| ||||| ||| || ||| ||||| || || Sbjct 34224 GTCCTATGTTGCGCCAATCCGAACTCGCTCG----ATCTGTGCAATCGCGTCCGTATAAC 34279 Query 161899 GCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTG 161958 || || || || || | ||| || || |||| ||| ||| | | || |||| || Sbjct 34280 GCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTG 34339 Query 161959 GGACAGTC--GTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCT 162016 || ||||| ||| |||| | ||| || | || || || || || ||| | | | Sbjct 34340 GGCCAGTCCGGTC--GGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCA 34397 Query 162017 TACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCG 162076 | || ||| || ||| |||| |||||||| || || ||||| || |||||||| || | Sbjct 34398 TCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTG 34457 Query 162077 CAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGC 162136 | || | ||||| |||| | ||||| |||||| | || || || || || | Sbjct 34458 CTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACAC 34517 Query 162137 TCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGG 162196 | | | | |||||||| || ||||| ||| || | | | || ||| || | Sbjct 34518 TGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAG 34577 Query 162197 AGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTA 162256 ||||||| || ||||||||||| || || || ||||| || | | |||| |||| Sbjct 34578 AGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCC 34637 Query 162257 GTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCA-TGGGTCTCTGGACA 162315 || || ||| ||| || ||| ||| | ||||| ||||||| ||| || | ||| Sbjct 34638 CCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCAC-GGATG 34696 Query 162316 AGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAG 162375 ||| |||| || | |||| || || | ||||| || || || ||||| || || ||| Sbjct 34697 AGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAG 34756 Query 162376 GAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTG 162435 ||| | || ||||| || ||||| || || ||||| ||||| |||||||| || | | Sbjct 34757 GAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCG 34816 Query 162436 AATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTC 162495 ||||| ||| ||||||| ||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 34817 AATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTC 34876 Query 162496 CCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGA 162531 || ||||| ||||| || | || ||||| || ||| Sbjct 34877 CCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGA 34912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551370775712400