Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq758 710 0.0 >seq758 Length=186484 Score = 710 bits (786), Expect = 0.0 Identities = 747/983 (76%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||||| ||| ||||| || | || || || || | || ||||||||||| ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACCC 188970 |||||||| || || | |||||||| | ||||| || ||| |||| || || Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 188971 CCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 189030 || ||||| ||||| || || ||||| ||||| ||||||| || || || || ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 189031 ATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATC 189090 || |||||||||||| || |||| | ||| ||| || ||| | |||||||||||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 189091 TGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTC 189150 |||||||| || || | ||||| ||||| |||||||| ||||| | | |||| | || Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 189151 TTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGT 189210 | |||||||| | || | |||||||||||||||||||||||| | ||| Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGC 93468 Query 189211 CTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCA 189270 | |||||||| ||||||||| |||| ||||| || ||||||||||| || |||| Sbjct 93469 TTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCC 93528 Query 189271 GTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 189330 || ||| || |||| ||| |||||||||| ||||| |||| ||||| || || ||| Sbjct 93529 GTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATC 93588 Query 189331 AGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 189390 ||| |||||||||| ||| | || |||||||| || ||||||||||| ||||| || Sbjct 93589 TCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCG 93648 Query 189391 TTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGT 189450 ||||||||| |||| || || || || ||||| || || || ||| || ||||||||| Sbjct 93649 TTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGT 93708 Query 189451 TCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGT 189510 || | || || ||| ||| | || ||||||||||| | || ||| ||| ||| Sbjct 93709 TCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGT 93768 Query 189511 TACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGT 189570 |||| |||||| || ||||| ||||| || ||||| || |||||||| || || |||||| Sbjct 93769 TACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGT 93828 Query 189571 CGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCT 189630 || | |||||||||||||| || || ||||||||||| || ||||| ||| | ||| Sbjct 93829 CGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCT 93888 Query 189631 GCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAAC 189690 || |||||||| || ||||||||||||||||| | ||| | ||||| ||||| |||||| Sbjct 93889 GCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAAC 93948 Query 189691 CTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACA 189750 || || || |||||||| || |||||| | ||||| | || || ||||| | |||||| Sbjct 93949 CTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACA 94008 Query 189751 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCT 189810 ||||| ||| || ||||||| || ||||||||||| || |||||||| ||||||||| Sbjct 94009 TGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCT 94068 Query 189811 CACAACTTCCCTCTTGATCTGGC 189833 |||||||||||||| |||||||| Sbjct 94069 CACAACTTCCCTCTAGATCTGGC 94091 Score = 288 bits (318), Expect = 1e-72 Identities = 671/1010 (66%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 |||||| ||| | |||| || |||| || |||||| ||||||| || ||| || Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118 || ||| ||| || | || || ||| | || || || || | || || || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTG 190178 ||||| |||||| | || ||| || | |||||| || | |||||| | |||| Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 190179 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAA 190238 || || || || | | ||||| | | | ||||||||||| || | ||| Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 190239 GGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 190298 || |||||| | | ||| |||| | || || || ||| | || || || ||||| || Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 190299 GCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGT--- 190355 ||||| | | | || || ||| | || || | ||||| || || ||| || Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCG----ATCTGTGCA 34263 Query 190356 ATC-CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 190414 ||| ||||| || || || || ||||| || | ||| ||||| |||| |||| ||| | Sbjct 34264 ATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATC 34323 Query 190415 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGC 190474 | ||| | || |||| || || || |||| | ||| || || |||||| ||||| Sbjct 34324 CTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGC 34383 Query 190475 GATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCA 190534 |||||||| | | ||||| || ||||| ||||||| ||||| || ||||| || || Sbjct 34384 CATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCA 34443 Query 190535 CATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGAC 190594 |||||||| ||||| || | | ||| | || | | || | || || | || Sbjct 34444 TATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAAC 34503 Query 190595 TGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTC 190654 || |||||||| ||| || |||||||| || || || || || | | | | Sbjct 34504 CGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCC 34563 Query 190655 TACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTT 190714 || ||| |||||||| ||||| ||||| ||||| || || || ||||| |||| | Sbjct 34564 GACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATC 34623 Query 190715 TGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTAT 190774 |||||||| | || || | ||| || ||| ||| | || || || || | Sbjct 34624 CGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCAC 34683 Query 190775 GGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 190834 ||| ||| | | || || | ||||||| || | || || || || ||||| Sbjct 34684 TGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGA 34743 Query 190835 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAA 190894 ||| || ||||| ||| | | |||||||||||||| |||||||| ||| ||||||||| Sbjct 34744 CTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAA 34803 Query 190895 AAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGA 190954 ||||| || | |||||| ||| ||||| | ||| ||||| || ||||| || ||||| Sbjct 34804 GAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGA 34863 Query 190955 GAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 191004 || | ||||| || || || || | || | || |||||||| |||| Sbjct 34864 AAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634073992092000