Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq758 765 0.0 >seq758 Length=186484 Score = 765 bits (848), Expect = 0.0 Identities = 765/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||||| ||| | || || | ||||| |||||| | || ||||||||||| ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || ||||| | |||||| | || |||||||| || | || ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || |||||||| || || |||||| ||||||| || || || || ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || ||||||||||| || | || | ||| ||| || ||| | ||||||||||||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 |||||||| |||||| ||||||||||||| ||||| || ||||| ||| |||| |||| Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931 ||||||||||| | || | |||||||||||||| |||||||||||| || |||| Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGC 93468 Query 160932 CTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCA 160991 | || |||||||| |||||| ||||| || || || |||||||| || || | || Sbjct 93469 TTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCC 93528 Query 160992 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATC 161051 || || | |||| ||| | |||||||| ||||| || |||||||| | || ||| Sbjct 93529 GTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATC 93588 Query 161052 TCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCC 161111 ||||| ||||||||||| ||| | || ||||| || |||||||||||||| ||||| || Sbjct 93589 TCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCG 93648 Query 161112 TTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGT 161171 ||||||||||||||||| ||||| || ||||| || ||||| ||| || ||||||||| Sbjct 93649 TTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGT 93708 Query 161172 TCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGT 161231 || |||| |||||| |||| | || |||||||||||||| || ||| ||| ||| Sbjct 93709 TCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGT 93768 Query 161232 TACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGT 161291 |||| ||||||||| ||||| || || || ||||| || |||||||| |||||||||||| Sbjct 93769 TACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGT 93828 Query 161292 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCA 161351 || ||||||||||||| ||| ||| || ||||||||||| | ||||| ||| | || Sbjct 93829 CGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCT 93888 Query 161352 GCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAAC 161411 || ||||| || || ||||||||||| || || | || | ||| ||||| |||||| Sbjct 93889 GCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAAC 93948 Query 161412 CTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACC 161471 || ||||| |||||||| ||||| ||| | | ||| | ||||| ||| | ||||| Sbjct 93949 CTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACA 94008 Query 161472 TGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCT 161531 ||||| ||| || | || || || |||||||||||||| || ||||| || ||||| ||| Sbjct 94009 TGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCT 94068 Query 161532 CACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 |||||||||||||| ||||| ||| | | ||| Sbjct 94069 CACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 280 bits (310), Expect = 2e-70 Identities = 658/989 (67%), Gaps = 8/989 (1%) Strand=Plus/Plus Query 163915 GAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTG 163974 |||| || |||| || |||||| ||||||| || ||| |||| ||| ||| | Sbjct 33924 GAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCT 33983 Query 163975 CAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCG 164034 | || || ||| | || |||||||| | ||| ||| ||||||| ||||| | | Sbjct 33984 CTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGG 34043 Query 164035 CGTCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTG 164091 | ||||| | | |||||| || | ||||| | |||| || || || || Sbjct 34044 C---TAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCA 34100 Query 164092 ATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTA 164151 | | ||||| | | | ||||||||||| ||| | || || || |||| Sbjct 34101 ACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCC 34160 Query 164152 GGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGA 164211 | ||||||||| | || || || ||| | || || || |||| || |||| | | ||| Sbjct 34161 GTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGA 34220 Query 164212 TCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATC-CGTCCGTACAAT 164270 | ||| ||| | || || | ||| | || || ||| | ||| |||||||| || Sbjct 34221 TGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATCGCGTCCGTATAAC 34279 Query 164271 GCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTC 164330 || || ||||| || | ||| || || || | ||| ||| | | | || | || | Sbjct 34280 GCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTG 34339 Query 164331 GGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC 164390 || || || || |||| | || ||| | || || || || |||||| ||| | || Sbjct 34340 GGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATC 34399 Query 164391 TTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCA 164450 | ||| || ||| ||||||| ||||| |||||||| || ||||||||||| ||||| Sbjct 34400 CTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCT 34459 Query 164451 GGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTG 164510 || | | |||| ||||| | |||||| ||| || || ||||| |||||||| || Sbjct 34460 GGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTG 34519 Query 164511 TTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAG 164570 || || |||||||| | ||||| ||| || | | | || || ||| |||||| Sbjct 34520 TTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAG 34579 Query 164571 ACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 164630 ||||| || ||||| ||||| || ||||| ||||| || | | ||| |||| | | Sbjct 34580 ACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCC 34639 Query 164631 AATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 164690 || || ||| ||| |||||| ||| | || || || |||| || ||| ||| Sbjct 34640 AACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGT 34699 Query 164691 TCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 164750 ||||||| | | ||||| || | ||||| || || ||||| || || || |||||| Sbjct 34700 GCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAG 34759 Query 164751 ATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAAT 164810 | | |||||||| ||||| || || || || || || ||||| || || ||| Sbjct 34760 GTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAAT 34819 Query 164811 GAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCA 164870 || || | ||||| |||||||| | || ||||| || ||| | ||||| || Sbjct 34820 GAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCC 34879 Query 164871 GAGGAAGTTCTTCCGAGAGGTAACGCACT 164899 ||||| ||||| || | || ||||| || Sbjct 34880 GAGGAGGTTCTACCCCGTGGAAACGCTCT 34908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559322700367200