Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq926 104 5e-20 seq137 104 5e-20 >seq926 Length=180086 Score = 104 bits (114), Expect = 5e-20 Identities = 223/326 (68%), Gaps = 7/326 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||||||| | |||| ||| || ||||||| || | || ||| | || Sbjct 26448 AGGGGAGTGAAATAGAACATGAAACCGTAAGCTTACAAGCAGTAGAAGGACGACTAATCG 26389 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| ||||| | ||| | |||||||| ||| ||| | | || || |||||||| Sbjct 26388 TTTGACTTCGTGCATGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGC-AGGTTAAG 26331 Query 130 GGCTTCAGGCCCGTTA-GCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 | || | | ||| |||||||||||||||||| |||||| ||| || Sbjct 26330 A--TAGAGAATATTAAAGCCATAGTGAAAGCGAGCCTTAATAGGGCGTA-AGTCACTGTT 26274 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| |||| || ||||||| ||| | |||| ||||| |||||| | | Sbjct 26273 TATAGACCCGAACCCGGATGATCTAGCCATGGCCAGGGTGAAGCTTAGGTAACACTAAGT 26214 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||||| | |||| || | || ||||||||||| Sbjct 26213 GGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGACGAGCTGTGGCTAGGGGTGAAAT 26154 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 ||||||| || ||| ||||| || Sbjct 26153 GCCAATCGAATCCGGAGCTAGCTGGT 26128 >seq137 Length=19730 Score = 104 bits (114), Expect = 5e-20 Identities = 223/326 (68%), Gaps = 7/326 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||||||| | |||| ||| || ||||||| || | || ||| | || Sbjct 8152 AGGGGAGTGAAATAGAACATGAAACCGTAAGCTTACAAGCAGTAGAAGGACGACTAATCG 8211 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| ||||| | ||| | |||||||| ||| ||| | | || || |||||||| Sbjct 8212 TTTGACTTCGTGCATGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGC-AGGTTAAG 8269 Query 130 GGCTTCAGGCCCGTTA-GCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 | || | | ||| |||||||||||||||||| |||||| ||| || Sbjct 8270 A--TAGAGAATATTAAAGCCATAGTGAAAGCGAGCCTTAATAGGGCGTA-AGTCACTGTT 8326 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| |||| || ||||||| ||| | |||| ||||| |||||| | | Sbjct 8327 TATAGACCCGAACCCGGATGATCTAGCCATGGCCAGGGTGAAGCTTAGGTAACACTAAGT 8386 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||||| | |||| || | || ||||||||||| Sbjct 8387 GGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGACGAGCTGTGGCTAGGGGTGAAAT 8446 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 ||||||| || ||| ||||| || Sbjct 8447 GCCAATCGAATCCGGAGCTAGCTGGT 8472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972790991872