Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq271 190 3e-46 seq758 167 4e-39 >seq271 Length=8214 Score = 190 bits (210), Expect = 3e-46 Identities = 202/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||||| |||||| ||||||||| |||||| | Sbjct 5640 GTACAAAGGGCAGGGACGTAATCAACGCCAGCTT-ATGACTGGCGCTTACTGGGAATT-C 5697 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||| |||| |||| | ||||| ||||| | ||||| | || Sbjct 5698 CTCGTTCATGGGCAATAATTCCAATCCCCAATCCCTGGCACGAAGGCGGTTCAACGGGTT 5757 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||| | ||| | | || || ||| | | ||||||||||||||||||| Sbjct 5758 ACCCCGCCCTTGCGGGCTAGGC-ACACACACGCTGAGTCCTTCAGTGTAGCGCGCGTGCG 5816 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct 5817 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGG-CTAAAC 5874 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 5875 GCCACTTGTCCCTCTAA 5891 >seq758 Length=101539 Score = 167 bits (184), Expect = 4e-39 Identities = 186/244 (76%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| |||| | | |||||| | ||||||| ||| ||| | Sbjct 6262 GTACAAAGGGCAGGGACGTATTCAGCGCGGGAT-GATGACCCACGCTTACAAGGTATT-C 6319 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||| | |||||||| || ||||||| ||||| |||| | |||||| Sbjct 6320 CTCGTTCAAGAGGGAAAATTGCAAGCCTCGATCCCCAGCACGAGCGGATTT-AGAGATTA 6378 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | || ||| || | | | |||||| |||||||||| ||||||||| Sbjct 6379 GGAAGCGCTCTCGCACATCCTCA----CCCGTTGACCCGCTCAGTGTAGCACGCGTGCGG 6434 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||| | | Sbjct 6435 CCCAGAACATCTAAGGGCATCTCAGACCTGTTATTGCCTGGAGCTTCCGTGGACTAGACG 6494 Query 241 GCCA 244 ||| Sbjct 6495 CCCA 6498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993254090