Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq758 87.8 1e-15 seq271 84.2 1e-14 >seq758 Length=101539 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/115 (78%), Gaps = 7/115 (6%) Strand=Plus/Plus Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACA-TCG--CCCGA 62 |||| |||||| |||| || | ||||||| | | |||||| ||| || ||||| Sbjct 6797 CAAACACTTTGGTTTCCCGAAGGGTGCCGGGTAGGCCAAAAT----ACAGTCCTACCCGA 6852 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||| ||||| || |||||||||||||||||||||||||||||| Sbjct 6853 TCCCCAGTCCTCATCGTTTATAGTAAAGACTACGACGGTATCTGATCGTCTTCGA 6907 >seq271 Length=8214 Score = 84.2 bits (92), Expect = 1e-14 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||| |||||| |||| || | | |||| | |||| ||| | || | Sbjct 6202 GAACCCAAACACTTTGGTTTCCCGCAGGCTGCCCGCAGGGTCATCCAATCA--ACGCCTG 6259 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 6260 CGGATCGCTAGTCGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 6318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278397583140