Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq758 233 4e-59 seq271 203 6e-50 >seq758 Length=101539 Score = 233 bits (258), Expect = 4e-59 Identities = 204/247 (83%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGG 132 |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 7152 TTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCGTTTGCCATGAATACATTAGCATGG 7093 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCT-AGGACCGCCGTAATGATT 191 |||||||||||||||| || | || |||||||||||| | |||| || ||||||||| Sbjct 7092 AATAATAGAATAGGACCTGTT-TCCTGTTTTGTTGGTTTGTGAGGATCGG-GTAATGATT 7035 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||||| || ||||| | |||||| ||||||||||||||||||||||| Sbjct 7034 AAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATTGGCG 6975 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||||| ||| |||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 6974 GAAGACAAACGGCTGCGAAAGCGTCTGCCAAGGACGTTTTCATTGATCA-AGAACGAAAG 6916 Query 312 TTAGGGG 318 | ||||| Sbjct 6915 TAAGGGG 6909 >seq271 Length=8214 Score = 203 bits (224), Expect = 6e-50 Identities = 221/285 (78%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| ||||||| || |||| | ||| ||||||||||||||||||| ||||| Sbjct 6600 TGCCCTTAGCTGGGTG-GCTGGGGTGGTCGGAAGGTTTACTTTGAAAAAATTAGTGTGTT 6542 Query 99 CAAAGCAGGCCTTT---GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||| ||||||| | || ||||| | |||||||||||| ||||||||| | |||| Sbjct 6541 CAAGGCAGGCCGGTTACGCCTGAATAACGTTGCATGGAATAATGGAATAGGACCT-CGGT 6483 Query 156 TCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||| || | ||| || ||||||||||| ||||| | |||||| | Sbjct 6482 TCTATTTTGTTGGCTT-TCGGAAGTCGAGGTAATGATTAAGAGGGACGGACGGGGGCATT 6424 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || ||||||||||||||||||| ||||| ||||||||||||||| Sbjct 6423 CGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGC 6364 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| |||||||||| || || Sbjct 6363 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 6320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191525248