Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq449 196 2e-47 seq758 170 8e-40 seq271 168 3e-39 >seq449 Length=3840 Score = 196 bits (216), Expect = 2e-47 Identities = 149/176 (85%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||||||||||||||| ||||||||||| | || |||||||| | |||||||| Sbjct 3654 TCAACGAGTCGAGTTGTTTGGGATTGCAGCTCTAATTTGGTGGTAAATTCCATCTAAAGC 3713 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||||||| ||||||||||||| ||||||| |||| |||||||| |||| |||| Sbjct 3714 TAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTT 3773 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 || ||||||||||||| || || |||||||| ||||| ||||||| | |||||| Sbjct 3774 TGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAG 3829 >seq758 Length=101539 Score = 170 bits (188), Expect = 8e-40 Identities = 214/285 (75%), Gaps = 24/285 (8%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| | ||||||| ||||| ||| Sbjct 4823 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCGCGGGTGCGAGTCGGAGGGTG-CAA 4765 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG-AG---GGTGCACCATCG 520 |||||| ||| | |||||| || ||| || || | || || || ||| Sbjct 4764 GCCCGTGGGCGAAGTGAAAGCGA------GTGTAAAAACGAGCAGTTTGGGGCGGCATAA 4711 Query 521 ACCGATCCTGATG-TCTTCGGATGGATTTGAGTAAGAGCA-TAGCTGTTGGGACCCGAAA 578 |||| | || |||| || || |||||| | || | |||||||||||| Sbjct 4710 ---GATCGT--TGATCTTAAGACCGACCC-----AGAGCAGTTGC-GCTGGGACCCGAAA 4662 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||| Sbjct 4661 GATGGTGAACTATGCCGGAGTAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGC 4602 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| ||||||||||| ||||| || |||||||||||||||| Sbjct 4601 GGTGCTGACGTGCAAATCGCTCGTCGAACTTGGGTATAGGGGCGA 4557 Score = 127 bits (140), Expect = 9e-27 Identities = 110/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA 96 || |||||| || | |||||||||| ||||||| | || ||||||| || || || |||| Sbjct 5139 GATGAGTCGGGTAGCTTGGGAATGCTGCTCTAA-TCGGTGGTAAATCTCATCGAAGGCTA 5081 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| ||| ||||||||||||| ||||||| |||| ||||||||| |||||||||| Sbjct 5080 AATAGCGGCTGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGACAAGCACTTTG 5021 Query 157 GAAAGAGAGTTAAAA 171 |||||| || |||| Sbjct 5020 AAAAGAGGGTGAAAA 5006 >seq271 Length=8214 Score = 168 bits (186), Expect = 3e-39 Identities = 107/116 (92%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| Sbjct 2952 GGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGACGAAGCCAGAGGAAACTCTGGTGG 2893 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 2892 AGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 2837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079980137300