Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq926 255 2e-65 seq137 255 2e-65 >seq926 Length=180086 Score = 255 bits (282), Expect = 2e-65 Identities = 305/411 (74%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| || ||| Sbjct 28299 TACCTGATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGC 28240 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| |||||||||||||||| | ||| |||| ||||| | | ||| Sbjct 28239 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTCTGTTGT 28180 Query 123 GAAATCCCCGGGCTTAACCT--GGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 |||| ||||| ||||| | || ||| | | ||| | ||||||||| || | Sbjct 28179 TAAATATTGGGGCTCAACCTTAAGCAA--GCAATGGAAACTACTAGACTAGAGTATGGTA 28122 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 || |||||||| ||||||| ||||||||||||||||| ||| |||||||| Sbjct 28121 TGGGTAAAGGGAATTCCCAGTGTAGCGGTGAAATGCGTAGATATTGGGAAGAACACCAGC 28062 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||| || || || || |||||| |||| |||||||| ||| ||| || Sbjct 28061 AGCGAAAGCGCTTTACTAGGCTATTACTGACACTCAGAGACGAAAGCTAGGGTAGCGAAT 28002 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360 ||||||||||||| ||||||| || |||||||| ||||| ||||| | | | Sbjct 28001 GGGATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACTAGATGTTGCGCGTATC 27942 Query 361 CTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || ||| |||||||||||||| |||| ||||||||| | ||| Sbjct 27941 GATCCGTGCAGTATCGTAGCTAACGCGTTAAGTATCCCGCCTGGGAAGTAC 27891 >seq137 Length=19730 Score = 255 bits (282), Expect = 2e-65 Identities = 305/411 (74%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| || ||| Sbjct 6301 TACCTGATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGC 6360 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| |||||||||||||||| | ||| |||| ||||| | | ||| Sbjct 6361 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTCTGTTGT 6420 Query 123 GAAATCCCCGGGCTTAACCT--GGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 |||| ||||| ||||| | || ||| | | ||| | ||||||||| || | Sbjct 6421 TAAATATTGGGGCTCAACCTTAAGCAA--GCAATGGAAACTACTAGACTAGAGTATGGTA 6478 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 || |||||||| ||||||| ||||||||||||||||| ||| |||||||| Sbjct 6479 TGGGTAAAGGGAATTCCCAGTGTAGCGGTGAAATGCGTAGATATTGGGAAGAACACCAGC 6538 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||| || || || || |||||| |||| |||||||| ||| ||| || Sbjct 6539 AGCGAAAGCGCTTTACTAGGCTATTACTGACACTCAGAGACGAAAGCTAGGGTAGCGAAT 6598 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360 ||||||||||||| ||||||| || |||||||| ||||| ||||| | | | Sbjct 6599 GGGATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACTAGATGTTGCGCGTATC 6658 Query 361 CTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || ||| |||||||||||||| |||| ||||||||| | ||| Sbjct 6659 GATCCGTGCAGTATCGTAGCTAACGCGTTAAGTATCCCGCCTGGGAAGTAC 6709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289588058304