Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq926 129 8e-28 seq137 129 8e-28 >seq926 Length=180086 Score = 129 bits (142), Expect = 8e-28 Identities = 175/248 (71%), Gaps = 26/248 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||| | | ||| || Sbjct 25130 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGC-GACTTAGCGG 25188 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| |||||| ||| ||| | Sbjct 25189 AGACCTGTGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGC----------AGCCCT 25238 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | |||||||||||| ||||||||||||||| |||||||||| Sbjct 25239 ACAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAG 25283 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||||||||| |||||| | | || |||||| || Sbjct 25284 TTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACTTACCTACTTGTGTCAGT 25343 Query 241 TTACGGTA 248 ||| |||| Sbjct 25344 TTAGGGTA 25351 >seq137 Length=19730 Score = 129 bits (142), Expect = 8e-28 Identities = 175/248 (71%), Gaps = 26/248 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||| | | ||| || Sbjct 9470 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGC-GACTTAGCGG 9412 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| |||||| ||| ||| | Sbjct 9411 AGACCTGTGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGC----------AGCCCT 9362 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | |||||||||||| ||||||||||||||| |||||||||| Sbjct 9361 ACAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAG 9317 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||||||||| |||||| | | || |||||| || Sbjct 9316 TTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACTTACCTACTTGTGTCAGT 9257 Query 241 TTACGGTA 248 ||| |||| Sbjct 9256 TTAGGGTA 9249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694393770798