Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq926 73.4 4e-11 seq137 73.4 4e-11 >seq926 Length=180086 Score = 73.4 bits (80), Expect = 4e-11 Identities = 118/167 (71%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| || || |||||||||| || ||| || | | | |||| Sbjct 25345 AAACTGACACAAGTAGGTAAGTAGAGTATACTAAGGGGCGCGAGATAA-CTCTCTCTAAG 25287 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||| | || |||| || | | ||| Sbjct 25286 GAACTCGGCAAAATAGCCCCGTAACTTCGGAAGAAGGGGTGCCC---------TTGTAGG 25236 Query 144 GC-GCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||| ||||| ||| || |||||||| |||||||||||| || Sbjct 25235 GCTGCAATAAATAGACCCAAGCGACTGTTTATCAAAAACACAGGTCT 25189 >seq137 Length=19730 Score = 73.4 bits (80), Expect = 4e-11 Identities = 118/167 (71%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| || || |||||||||| || ||| || | | | |||| Sbjct 9255 AAACTGACACAAGTAGGTAAGTAGAGTATACTAAGGGGCGCGAGATAA-CTCTCTCTAAG 9313 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||| | || |||| || | | ||| Sbjct 9314 GAACTCGGCAAAATAGCCCCGTAACTTCGGAAGAAGGGGTGCCC---------TTGTAGG 9364 Query 144 GC-GCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||| ||||| ||| || |||||||| |||||||||||| || Sbjct 9365 GCTGCAATAAATAGACCCAAGCGACTGTTTATCAAAAACACAGGTCT 9411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531195234804