Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq926 241 3e-61 seq137 241 3e-61 seq510 75.2 3e-11 >seq926 Length=180086 Score = 241 bits (266), Expect = 3e-61 Identities = 215/268 (80%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 24948 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 25007 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25008 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 25067 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG-CGTTAGCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | | ||||| | | | |||||| | Sbjct 25068 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTACTAGCTTTGCCAATGACTAACCAGCT 25127 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 25128 TCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGCGACTTAGCG 25187 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| |||||||||| |||||||||||| Sbjct 25188 GAGACCTGTGTTTTTGATAAACAGTCGC 25215 >seq137 Length=19730 Score = 241 bits (266), Expect = 3e-61 Identities = 215/268 (80%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 9652 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 9593 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9592 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 9533 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG-CGTTAGCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | | ||||| | | | |||||| | Sbjct 9532 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTACTAGCTTTGCCAATGACTAACCAGCT 9473 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 9472 TCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGCGACTTAGCG 9413 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| |||||||||| |||||||||||| Sbjct 9412 GAGACCTGTGTTTTTGATAAACAGTCGC 9385 >seq510 Length=250633 Score = 75.2 bits (82), Expect = 3e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 ||||||| |||||| ||||| ||||||| |||||||||||||||||| |||| |||| Sbjct 78641 GCCATTCATGCAGGACGGAATTTACCCGTCAAGGAATTTCGCTACCTAAGGATTCTTATA 78700 Query 135 GTTA 138 |||| Sbjct 78701 GTTA 78704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260788324992