Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq926 376 5e-102 seq137 376 5e-102 >seq926 Length=180086 Score = 376 bits (416), Expect = 5e-102 Identities = 298/350 (85%), Gaps = 11/350 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | | ||||| |||||||| | ||||||||| ||||||||||| Sbjct 24948 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 25007 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25008 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 25067 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTT--CGATTGCTCTAA-CAG 182 ||||||||||||||||| || ||||||| |||| ||| |||| | | || |||| ||| Sbjct 25068 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTT-ACTAGCTTTGCCAATG-ACTAACCAG 25125 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||||||||||| |||| |||||||||||||| || |||||| ||||||||||||| Sbjct 25126 CT-TCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGCGACTTA 25184 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||| |||||||||||||||| ||||| ||| || | || Sbjct 25185 GCGGAGACCTGTGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAGC----CCTAC 25240 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 25241 AAGGGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 25290 >seq137 Length=19730 Score = 376 bits (416), Expect = 5e-102 Identities = 298/350 (85%), Gaps = 11/350 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | | ||||| |||||||| | ||||||||| ||||||||||| Sbjct 9652 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 9593 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9592 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 9533 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTT--CGATTGCTCTAA-CAG 182 ||||||||||||||||| || ||||||| |||| ||| |||| | | || |||| ||| Sbjct 9532 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTT-ACTAGCTTTGCCAATG-ACTAACCAG 9475 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||||||||||| |||| |||||||||||||| || |||||| ||||||||||||| Sbjct 9474 CT-TCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTGCGACTTA 9416 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||| |||||||||||||||| ||||| ||| || | || Sbjct 9415 GCGGAGACCTGTGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAGC----CCTAC 9360 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 9359 AAGGGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 9310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062390162176