Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq926 466 5e-129 seq137 466 5e-129 >seq926 Length=180086 Score = 466 bits (516), Expect = 5e-129 Identities = 408/502 (81%), Gaps = 13/502 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 27893 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 27834 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| ||||||||||||||| |||||||| || | Sbjct 27833 GTGGTTTAATTCGATGCAACACGAAGAACCTTACCAGTGCTTGACATGTCACGAATTTTT 27774 Query 121 TAGAGAT--AGAGGTTTCCCCTTCGGGGGACAGAGTGA---CAGGTGATGCATGGTTGTC 175 || || | | || |||||||| || |||| |||||| ||||||| |||| Sbjct 27773 ACGAAATTAAAAAGTG---CCTTCGGGA-AC---GTGAACACAGGTGGTGCATGGCTGTC 27721 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 27720 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTA 27661 Query 236 GTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 27660 GTTGCCATCATTTAGTTGGGCACTCTAAAGAGACTGCCGGTGACAAGCCGGAGGAAGGTA 27601 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||| |||||||| ||| ||||||||||| | | |||||||||||||||||||||||| Sbjct 27600 AGGATGACGTCAAGTCAGCATGCCCCTTAAGCTCTGGGCTACACACGTGCTACAATGGTT 27541 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||||| | || || | | || | |||| |||| |||||| ||||||||| Sbjct 27540 GTGACAAAGAGTCGCAAATCTGTGAAGATAAGCTAATCTCATAAACGCAGCCTCAGTTCG 27481 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 |||||||| ||| |||||| ||| |||||| |||||||||||||||||| | ||||| | Sbjct 27480 GATTGTAGGCTGAAACTCGCCTACATGAAGGTGGAATCGCTAGTAATCGCCGGTCAGCTA 27421 Query 475 TGCTACGGTGAATACGTTCCCG 496 | | |||||||| |||||||| Sbjct 27420 TACGGCGGTGAATCCGTTCCCG 27399 >seq137 Length=19730 Score = 466 bits (516), Expect = 5e-129 Identities = 408/502 (81%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6707 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 6766 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| ||||||||||||||| |||||||| || | Sbjct 6767 GTGGTTTAATTCGATGCAACACGAAGAACCTTACCAGTGCTTGACATGTCACGAATTTTT 6826 Query 121 TAGAGAT--AGAGGTTTCCCCTTCGGGGGACAGAGTGA---CAGGTGATGCATGGTTGTC 175 || || | | || |||||||| || |||| |||||| ||||||| |||| Sbjct 6827 ACGAAATTAAAAAGTG---CCTTCGGGA-AC---GTGAACACAGGTGGTGCATGGCTGTC 6879 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 6880 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTA 6939 Query 236 GTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 6940 GTTGCCATCATTTAGTTGGGCACTCTAAAGAGACTGCCGGTGACAAGCCGGAGGAAGGTA 6999 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||| |||||||| ||| ||||||||||| | | |||||||||||||||||||||||| Sbjct 7000 AGGATGACGTCAAGTCAGCATGCCCCTTAAGCTCTGGGCTACACACGTGCTACAATGGTT 7059 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||||| | || || | | || | |||| |||| |||||| ||||||||| Sbjct 7060 GTGACAAAGAGTCGCAAATCTGTGAAGATAAGCTAATCTCATAAACGCAGCCTCAGTTCG 7119 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 |||||||| ||| |||||| ||| |||||| |||||||||||||||||| | ||||| | Sbjct 7120 GATTGTAGGCTGAAACTCGCCTACATGAAGGTGGAATCGCTAGTAATCGCCGGTCAGCTA 7179 Query 475 TGCTACGGTGAATACGTTCCCG 496 | | |||||||| |||||||| Sbjct 7180 TACGGCGGTGAATCCGTTCCCG 7201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503986072960