Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq758 255 9e-66 seq271 205 1e-50 seq510 161 2e-37 >seq758 Length=101539 Score = 255 bits (282), Expect = 9e-66 Identities = 208/250 (83%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6415 TCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCTCAGACCTGTTATTGCCTG 6474 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-GCC-----ACCAACCA 129 | ||||| | | || || ||| | ||||| |||| |||| || ||| ||||| | Sbjct 6475 GAGCTTCCGTGGACTAGACGCCCACAGTCCGTCTAGGAAGGCAAGCCTCAGTACCAAAAA 6534 Query 130 TAGTCGATGGGGC-TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | ||| || || ||||| | |||||||| |||||| |||||||||||||||| Sbjct 6535 ACGGTACTGGCGCCTAGCTAGCACGCCCAGGTCTCGCTCGTTAACGGAATTAACCAGACA 6594 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6595 GATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCATAGAATCAAGAAAGAGCTC 6654 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 6655 TCAATCTGTC 6664 >seq271 Length=8214 Score = 205 bits (226), Expect = 1e-50 Identities = 214/284 (75%), Gaps = 39/284 (14%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 5794 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 5853 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-------------CCA 118 | |||| || | | |||| | |||| | |||||||||||||| || Sbjct 5854 C-TCAATCTCGCGT-GGCTAAACGCCACTTGTCCCTCTAAGAAGTTGCGCCGGCCCTCCC 5911 Query 119 GCCACCAACCA-----TAGTCGATGG------GGC-------------TATTTAGCAGGT 154 || |||| | | | || || ||| |||||| ||| Sbjct 5912 ACCGCCAAGCTCGCGCTCGCCGCAGGACCACGGGCACACTGCACCAACTATTTAATAGGC 5971 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 5972 CAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC 6031 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 6032 ATGCACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 6075 >seq510 Length=250633 Score = 161 bits (178), Expect = 2e-37 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 173258 AGGTCTCGCTCGTTAACGGAATTAACCAGACAGATCACTCCACCAACTAAGAACGGCCAT 173199 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||||||||||||||||||||| |||||||||| Sbjct 173198 GCACCACCAACCATAGAATCAAGAAAGAGCTCTCAATCTGTC 173157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796792852206