Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq271 354 1e-95 seq758 329 6e-88 seq540 100 5e-19 seq522 100 5e-19 seq627 86.0 1e-14 seq684 78.8 2e-12 seq926 73.4 7e-11 seq137 73.4 7e-11 >seq271 Length=8214 Score = 354 bits (392), Expect = 1e-95 Identities = 242/272 (89%), Gaps = 9/272 (3%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 410 GTCATCGGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 469 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||| | | |||||||||||| |||||||||||||||| Sbjct 470 ATTGGTGGGTGAACAATCCAACACGTGGGGAATTCTGCTTCCCAATGATAGGAAGAGCCG 529 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 589 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT------TCG---AGGGACTAAAG 260 |||||||||||||||||| ||||||| || | ||| | ||| || ||| |||| Sbjct 590 CCTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCCTAACTCGGACAGCGACAAAAG 649 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||||||||||| |||||| ||| |||||| Sbjct 650 GATCGATAGGCCACGCTTTCACGGTCTGTATT 681 >seq758 Length=101539 Score = 329 bits (364), Expect = 6e-88 Identities = 223/250 (89%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2531 TCATCGGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 2590 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | ||||||||||||| || ||| || |||||||| || ||||||||||||||||| Sbjct 2591 TTGGCGGGTGAACAATCCGACACTTGGCGTATTCTGCTACGCAATGATAGGAAGAGCCGA 2650 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2651 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 2710 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| || |||||| |||| |||||||||||||| Sbjct 2711 CTGTGGTAACTTTTCTGACACCTCTCGCTTCAAATCTCGAATCGTGAAAGGATCGATAGG 2770 Query 271 CCACACTTTC 280 |||| ||||| Sbjct 2771 CCACGCTTTC 2780 Score = 307 bits (340), Expect = 2e-81 Identities = 200/220 (91%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 12296 TCATCGGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 12355 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | ||||||||||||| || ||| || |||||||| || ||||||||||||||||| Sbjct 12356 TTGGCGGGTGAACAATCCGACACTTGGCGTATTCTGCTACGCAATGATAGGAAGAGCCGA 12415 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 12416 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 12475 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||| ||||||| || |||||| |||| Sbjct 12476 CTGTGGTAACTTTTCTGACACCTCTCGCTTCAAATCTCGA 12515 >seq540 Length=599715 Score = 100 bits (110), Expect = 5e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| ||||| | | |||||| |||| Sbjct 184443 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTTTCGTTTCAAATCTCGAATCGT 184384 Query 256 TAAAGGATCGATAGGCCACACTTTC 280 ||||||||||||||||||| ||||| Sbjct 184383 TAAAGGATCGATAGGCCACGCTTTC 184359 >seq522 Length=239481 Score = 100 bits (110), Expect = 5e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 |||||||||||||||||||||||||||||| ||||||| || |||||| |||| | Sbjct 19397 AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTCGCTTCAAATCTCGAATCGTGA 19338 Query 258 AAGGATCGATAGGCCACACTTTC 280 ||||||||||||||||| ||||| Sbjct 19337 AAGGATCGATAGGCCACGCTTTC 19315 >seq627 Length=167540 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 ||||| ||||||||||||||||| |||| ||| ||||||| || ||| || |||| | Sbjct 98141 ACAAGGCAGTTATCCCTGTGGTAGCTTTCCTGACACCTCTCGCTTCATATCTCGAATCGC 98082 Query 256 TAAAGGATCGATAGGCCACACTTTC 280 ||| |||||||||||||| ||||| Sbjct 98081 GAAAAGATCGATAGGCCACGCTTTC 98057 >seq684 Length=529288 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 ||||||||||||||||||||||||||| | ||||||| || |||||| | || | Sbjct 443594 AAGCCAGTTATCCCTGTGGTAACTTTTTCGACACCTCTCGCTTCAAATCTTGAATCGTGA 443535 Query 258 AAGGATCGATAGGCCACACTTTC 280 |||||| | |||||||| ||||| Sbjct 443534 AAGGATTGGTAGGCCACGCTTTC 443512 >seq926 Length=180086 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 24379 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 24438 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 24439 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 24495 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 24496 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 24550 >seq137 Length=19730 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 10221 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 10162 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 10161 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 10105 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 10104 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 10050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392088256